Wall clock time and date at job start Mon Mar 30 2020 02:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99991 * 2 1 4 4 H 1.48502 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47182 * 299.99371 * 3 2 1 6 6 H 1.48503 * 109.47241 * 59.99667 * 3 2 1 7 7 C 1.37881 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99358 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00158 * 0.02562 * 7 2 1 10 10 H 1.09004 * 115.56783 * 34.28463 * 9 7 2 11 11 C 1.53018 * 117.49988 * 248.58829 * 9 7 2 12 12 C 1.52899 * 59.97814 * 252.51626 * 11 9 7 13 13 C 1.52767 * 118.04279 * 106.01806 * 12 11 9 14 14 C 1.53382 * 108.39347 * 194.80138 * 13 12 11 15 15 C 1.52655 * 109.17169 * 290.07099 * 14 13 12 16 16 C 1.52621 * 110.98594 * 57.54366 * 15 14 13 17 17 H 1.09005 * 115.42309 * 124.65429 * 16 15 14 18 18 C 1.53605 * 116.15660 * 266.39842 * 16 15 14 19 19 C 1.52340 * 59.79634 * 111.14047 * 18 16 15 20 20 H 1.09002 * 116.77839 * 107.06096 * 19 18 16 21 21 H 0.97000 * 119.99499 * 0.02562 * 1 2 3 22 22 H 1.09004 * 117.50487 * 145.03559 * 11 9 7 23 23 H 1.09003 * 117.52444 * 359.97438 * 11 9 7 24 24 H 1.09000 * 109.07838 * 75.31680 * 13 12 11 25 25 H 1.09004 * 109.99475 * 314.82504 * 13 12 11 26 26 H 1.08997 * 109.52262 * 170.15564 * 14 13 12 27 27 H 1.09003 * 109.52130 * 49.97555 * 14 13 12 28 28 H 1.09000 * 109.17166 * 297.15521 * 15 14 13 29 29 H 1.09001 * 109.17472 * 177.93662 * 15 14 13 30 30 H 1.09005 * 117.52142 * 3.70660 * 18 16 15 31 31 H 1.09007 * 117.52037 * 218.57107 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.3124 -2.5004 -0.5537 11 6 1.3264 -3.3585 1.2644 12 6 2.0725 -3.7888 0.0011 13 6 3.5915 -3.6286 -0.0256 14 6 4.0669 -3.7626 -1.4777 15 6 3.8987 -5.2113 -1.9286 16 6 2.4473 -5.6622 -1.7888 17 1 1.9894 -6.0537 -2.6972 18 6 2.0815 -6.3694 -0.4751 19 6 1.5285 -4.9828 -0.7789 20 1 0.4722 -4.9218 -1.0406 21 1 -0.4849 0.8401 -0.0004 22 1 0.4374 -3.9252 1.5415 23 1 1.9212 -2.9804 2.0959 24 1 4.0431 -4.4113 0.5840 25 1 3.8700 -2.6497 0.3647 26 1 5.1175 -3.4799 -1.5446 27 1 3.4720 -3.1107 -2.1174 28 1 4.5334 -5.8526 -1.3170 29 1 4.2021 -5.2991 -2.9718 30 1 2.8561 -6.4467 0.2879 31 1 1.3906 -7.2106 -0.5314 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260039675.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:15 Heat of formation + Delta-G solvation = 28.712670 kcal Electronic energy + Delta-G solvation = -12134.472823 eV Core-core repulsion = 10188.417370 eV Total energy + Delta-G solvation = -1946.055453 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 192.121 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.14890 -35.17849 -32.30269 -32.03345 -27.05929 -25.52320 -22.46628 -22.01541 -20.26556 -19.93373 -16.98387 -16.19243 -15.64380 -14.47167 -13.95440 -13.56186 -12.92434 -12.70182 -12.32305 -12.08934 -11.43936 -11.02782 -10.94194 -10.72833 -10.61715 -10.60043 -10.02825 -9.89456 -9.66175 -9.54450 -9.02519 -8.84161 -8.18429 -7.91453 -6.05146 -4.02928 3.28486 3.36797 3.40410 4.23393 4.41139 5.00075 5.18438 5.28279 5.41295 5.52874 5.69047 5.89337 5.94031 5.99426 6.18186 6.21065 6.26146 6.36064 6.44988 6.55166 6.67585 6.72676 6.84529 6.96034 7.00568 7.12101 7.17107 7.45940 7.70845 7.94491 8.49127 8.98643 9.56609 11.05781 Molecular weight = 192.12amu Principal moments of inertia in cm(-1) A = 0.051290 B = 0.011283 C = 0.010155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.785672 B = 2481.017014 C = 2756.553556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.490 4.490 8 H 0.066 0.934 9 C 0.047 3.953 10 H 0.073 0.927 11 C -0.199 4.199 12 C -0.135 4.135 13 C -0.072 4.072 14 C -0.113 4.113 15 C -0.083 4.083 16 C -0.153 4.153 17 H 0.092 0.908 18 C -0.190 4.190 19 C -0.080 4.080 20 H 0.092 0.908 21 H 0.261 0.739 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.142 -8.017 -2.056 9.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.528 4.528 8 H 0.084 0.916 9 C 0.028 3.972 10 H 0.091 0.909 11 C -0.237 4.237 12 C -0.135 4.135 13 C -0.109 4.109 14 C -0.150 4.150 15 C -0.120 4.120 16 C -0.171 4.171 17 H 0.110 0.890 18 C -0.227 4.227 19 C -0.098 4.098 20 H 0.110 0.890 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.986 -7.892 -2.063 9.560 hybrid contribution 0.252 0.715 0.094 0.764 sum 5.238 -7.177 -1.968 9.101 Atomic orbital electron populations 1.69987 1.06096 1.26593 1.49845 1.25041 0.94819 0.99227 0.94663 0.86534 0.80200 0.83668 0.77622 1.19592 1.20936 1.20986 1.20802 0.92838 0.89225 1.49886 0.91606 1.19972 0.95829 0.87670 0.93702 0.90915 1.23050 1.00560 1.07242 0.92851 1.20699 0.93420 0.97424 1.01972 1.20999 0.93596 1.01175 0.95165 1.21424 0.99785 0.95708 0.98096 1.20911 0.93762 0.97130 1.00203 1.22197 0.96793 1.05090 0.93061 0.88957 1.23057 1.04150 0.96116 0.99351 1.21385 0.97080 0.91710 0.99612 0.88952 0.92967 0.91881 0.90702 0.94379 0.90349 0.93129 0.91003 0.92710 0.92640 0.89297 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.13 55.43 0.73 -25.27 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.49 -13.41 8.60 -34.44 -0.30 -13.70 16 8 H 0.07 1.75 5.71 -52.49 -0.30 1.45 16 9 C 0.05 1.20 5.31 -91.81 -0.49 0.71 16 10 H 0.07 2.03 7.90 -51.93 -0.41 1.62 16 11 C -0.20 -4.59 9.71 -26.77 -0.26 -4.85 16 12 C -0.13 -2.88 2.06 -154.91 -0.32 -3.19 16 13 C -0.07 -1.42 5.06 -26.65 -0.13 -1.56 16 14 C -0.11 -1.98 5.87 -26.71 -0.16 -2.14 16 15 C -0.08 -1.27 5.79 -27.10 -0.16 -1.43 16 16 C -0.15 -2.48 6.20 -90.75 -0.56 -3.04 16 17 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 18 C -0.19 -3.00 9.73 -26.75 -0.26 -3.27 16 19 C -0.08 -1.50 5.67 -91.40 -0.52 -2.01 16 20 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 21 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 22 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 23 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 24 H 0.04 0.69 8.01 -51.93 -0.42 0.28 16 25 H 0.08 1.68 5.68 -51.93 -0.29 1.39 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 28 H 0.05 0.79 8.02 -51.93 -0.42 0.37 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.41 8.05 -51.93 -0.42 0.99 16 31 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 LS Contribution 250.22 15.07 3.77 3.77 Total: -1.00 -28.11 250.22 -8.54 -36.65 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.77 Total: 1.43 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: -3.25 Total: -32.77 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.73 Total: -25.27 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.11 -8.54 -36.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039675.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.367 kcal (2) G-P(sol) polarization free energy of solvation -28.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds