Wall clock time and date at job start Mon Mar 30 2020 02:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99991 * 2 1 4 4 H 1.48502 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47182 * 299.99371 * 3 2 1 6 6 H 1.48503 * 109.47241 * 59.99667 * 3 2 1 7 7 C 1.37881 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99358 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00158 * 0.02562 * 7 2 1 10 10 H 1.09004 * 115.56783 * 34.28463 * 9 7 2 11 11 C 1.53018 * 117.49988 * 248.58829 * 9 7 2 12 12 C 1.52899 * 59.97814 * 252.51626 * 11 9 7 13 13 C 1.52767 * 118.04279 * 106.01806 * 12 11 9 14 14 C 1.53382 * 108.39347 * 194.80138 * 13 12 11 15 15 C 1.52655 * 109.17169 * 290.07099 * 14 13 12 16 16 C 1.52621 * 110.98594 * 57.54366 * 15 14 13 17 17 H 1.09005 * 115.42309 * 124.65429 * 16 15 14 18 18 C 1.53605 * 116.15660 * 266.39842 * 16 15 14 19 19 C 1.52340 * 59.79634 * 111.14047 * 18 16 15 20 20 H 1.09002 * 116.77839 * 107.06096 * 19 18 16 21 21 H 0.97000 * 119.99499 * 0.02562 * 1 2 3 22 22 H 1.09004 * 117.50487 * 145.03559 * 11 9 7 23 23 H 1.09003 * 117.52444 * 359.97438 * 11 9 7 24 24 H 1.09000 * 109.07838 * 75.31680 * 13 12 11 25 25 H 1.09004 * 109.99475 * 314.82504 * 13 12 11 26 26 H 1.08997 * 109.52262 * 170.15564 * 14 13 12 27 27 H 1.09003 * 109.52130 * 49.97555 * 14 13 12 28 28 H 1.09000 * 109.17166 * 297.15521 * 15 14 13 29 29 H 1.09001 * 109.17472 * 177.93662 * 15 14 13 30 30 H 1.09005 * 117.52142 * 3.70660 * 18 16 15 31 31 H 1.09007 * 117.52037 * 218.57107 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.3124 -2.5004 -0.5537 11 6 1.3264 -3.3585 1.2644 12 6 2.0725 -3.7888 0.0011 13 6 3.5915 -3.6286 -0.0256 14 6 4.0669 -3.7626 -1.4777 15 6 3.8987 -5.2113 -1.9286 16 6 2.4473 -5.6622 -1.7888 17 1 1.9894 -6.0537 -2.6972 18 6 2.0815 -6.3694 -0.4751 19 6 1.5285 -4.9828 -0.7789 20 1 0.4722 -4.9218 -1.0406 21 1 -0.4849 0.8401 -0.0004 22 1 0.4374 -3.9252 1.5415 23 1 1.9212 -2.9804 2.0959 24 1 4.0431 -4.4113 0.5840 25 1 3.8700 -2.6497 0.3647 26 1 5.1175 -3.4799 -1.5446 27 1 3.4720 -3.1107 -2.1174 28 1 4.5334 -5.8526 -1.3170 29 1 4.2021 -5.2991 -2.9718 30 1 2.8561 -6.4467 0.2879 31 1 1.3906 -7.2106 -0.5314 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260039675.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:15 Heat of formation + Delta-G solvation = 14.656003 kcal Electronic energy + Delta-G solvation = -12135.082365 eV Core-core repulsion = 10188.417370 eV Total energy + Delta-G solvation = -1946.664996 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 192.121 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.67458 -36.87829 -34.15523 -33.65986 -28.61241 -27.55474 -23.95905 -23.44688 -22.23991 -21.31262 -18.61905 -18.22162 -17.12038 -16.32417 -15.60320 -15.13913 -14.42219 -14.21243 -13.97639 -13.61223 -13.23757 -12.92256 -12.76052 -12.37264 -12.14094 -12.05957 -11.83330 -11.43765 -11.31161 -11.11227 -10.79690 -10.61786 -10.09791 -9.65950 -8.16845 -6.20330 1.39811 1.40897 1.53415 2.40862 2.81127 3.10362 3.59529 3.80619 3.95276 4.16350 4.28271 4.41819 4.49952 4.57794 4.66261 4.79491 4.83531 4.95172 4.99460 5.07140 5.11876 5.15192 5.23049 5.40671 5.43073 5.52301 5.62215 5.65598 5.75237 5.86820 6.41181 6.87133 7.41751 8.95428 Molecular weight = 192.12amu Principal moments of inertia in cm(-1) A = 0.051290 B = 0.011283 C = 0.010155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.785672 B = 2481.017014 C = 2756.553556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.961 3.039 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.499 4.499 8 H 0.070 0.930 9 C 0.005 3.995 10 H 0.035 0.965 11 C -0.200 4.200 12 C -0.100 4.100 13 C -0.074 4.074 14 C -0.110 4.110 15 C -0.081 4.081 16 C -0.144 4.144 17 H 0.110 0.890 18 C -0.164 4.164 19 C -0.121 4.121 20 H 0.079 0.921 21 H 0.261 0.739 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.187 -9.511 -2.504 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.785 3.215 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.536 4.536 8 H 0.087 0.913 9 C -0.013 4.013 10 H 0.053 0.947 11 C -0.238 4.238 12 C -0.101 4.101 13 C -0.111 4.111 14 C -0.148 4.148 15 C -0.118 4.118 16 C -0.163 4.163 17 H 0.128 0.872 18 C -0.201 4.201 19 C -0.139 4.139 20 H 0.097 0.903 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.046 -9.399 -2.511 12.012 hybrid contribution -0.413 1.115 0.241 1.213 sum 6.633 -8.284 -2.271 10.853 Atomic orbital electron populations 1.70127 1.07764 1.27412 1.51652 1.25915 0.95647 1.02944 0.94615 0.85463 0.79266 0.79118 0.77611 1.18423 1.20521 1.20666 1.21131 0.93139 0.90243 1.49074 0.91252 1.19815 0.95829 0.89709 0.95983 0.94667 1.23005 1.01388 1.06715 0.92701 1.20745 0.94157 0.95695 0.99457 1.21026 0.92244 1.00660 0.97211 1.21397 1.00455 0.97159 0.95777 1.20953 0.93414 0.95388 1.02059 1.22382 0.96700 1.03443 0.93730 0.87195 1.23131 1.03702 0.94226 0.99026 1.21315 0.97169 0.92807 1.02642 0.90320 0.92988 0.91363 0.91165 0.92113 0.92678 0.90932 0.93857 0.90716 0.90330 0.88709 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.13 21.45 0.28 -56.36 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.50 -28.08 8.60 25.60 0.22 -27.86 16 8 H 0.07 3.76 5.71 -2.91 -0.02 3.75 16 9 C 0.01 0.28 5.31 -11.57 -0.06 0.22 16 10 H 0.04 2.11 7.90 -2.38 -0.02 2.09 16 11 C -0.20 -9.44 9.71 30.57 0.30 -9.14 16 12 C -0.10 -4.27 2.06 -52.44 -0.11 -4.38 16 13 C -0.07 -2.82 5.06 30.65 0.16 -2.66 16 14 C -0.11 -3.63 5.87 30.61 0.18 -3.45 16 15 C -0.08 -2.15 5.79 30.35 0.18 -1.98 16 16 C -0.14 -4.19 6.20 -10.88 -0.07 -4.26 16 17 H 0.11 2.83 8.14 -2.38 -0.02 2.81 16 18 C -0.16 -4.60 9.73 30.58 0.30 -4.30 16 19 C -0.12 -4.40 5.67 -11.30 -0.06 -4.47 16 20 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 21 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 22 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 23 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 24 H 0.06 2.04 8.01 -2.39 -0.02 2.02 16 25 H 0.05 2.34 5.68 -2.39 -0.01 2.32 16 26 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 27 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 28 H 0.07 1.75 8.02 -2.39 -0.02 1.73 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.09 2.58 8.05 -2.38 -0.02 2.56 16 31 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -62.21 250.22 4.88 -57.32 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 1.09 Total: 14.14 kcal Atomic # 6 Polarization: -62.91 SS G_CDS: 1.49 Total: -61.42 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.28 Total: -56.36 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -62.21 4.88 -57.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039675.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.980 kcal (2) G-P(sol) polarization free energy of solvation -62.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds