Wall clock time and date at job start Mon Mar 30 2020 02:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.31810 * 119.11883 * 2 1 4 4 C 1.32322 * 120.81021 * 179.97438 * 3 2 1 5 5 C 1.38615 * 119.10893 * 359.74601 * 4 3 2 6 6 C 1.38583 * 118.39647 * 0.51326 * 5 4 3 7 7 C 1.50699 * 120.44727 * 179.76241 * 6 5 4 8 8 H 1.09000 * 109.47247 * 154.72268 * 7 6 5 9 9 C 1.52997 * 109.47265 * 34.72082 * 7 6 5 10 10 C 1.50706 * 109.46817 * 274.72205 * 7 6 5 11 11 H 1.07995 * 120.00167 * 359.72198 * 10 7 6 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 7 15 15 H 1.48490 * 109.47405 * 60.00219 * 14 12 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 18 18 N 1.31776 * 119.12151 * 180.02562 * 2 1 3 19 19 H 1.08995 * 109.47319 * 269.97924 * 1 2 3 20 20 H 1.08995 * 109.47040 * 29.98145 * 1 2 3 21 21 H 1.09000 * 109.46963 * 149.97866 * 1 2 3 22 22 H 1.07998 * 120.44196 * 179.97438 * 4 3 2 23 23 H 1.07999 * 120.80298 * 180.25354 * 5 4 3 24 24 H 1.09000 * 109.47140 * 300.00252 * 9 7 6 25 25 H 1.09001 * 109.47230 * 59.99396 * 9 7 6 26 26 H 1.09001 * 109.47375 * 180.02562 * 9 7 6 27 27 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4712 1.1906 0.0005 5 6 4.1809 -0.0001 0.0064 6 6 3.4713 -1.1904 0.0007 7 6 4.1962 -2.5116 0.0013 8 1 3.5542 -3.2781 0.4356 9 6 5.4771 -2.3902 0.8291 10 6 4.5469 -2.8928 -1.4139 11 1 4.2684 -2.2455 -2.2323 12 6 5.2188 -4.0705 -1.6642 13 7 5.5531 -4.8614 -0.6681 14 14 5.6541 -4.5426 -3.4184 15 1 6.5285 -3.4982 -4.0096 16 1 6.3683 -5.8447 -3.4177 17 1 4.4111 -4.6609 -4.2223 18 7 2.1484 -1.1512 -0.0005 19 1 -0.3634 -0.0004 1.0276 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3633 -0.8898 -0.5142 22 1 3.9906 2.1374 0.0001 23 1 5.2609 -0.0001 0.0111 24 1 6.1190 -1.6237 0.3949 25 1 5.2234 -2.1143 1.8527 26 1 6.0016 -3.3457 0.8292 27 1 6.0254 -5.6901 -0.8443 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260042194.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:19 Heat of formation + Delta-G solvation = 14.009186 kcal Electronic energy + Delta-G solvation = -11564.755707 eV Core-core repulsion = 9514.522320 eV Total energy + Delta-G solvation = -2050.233387 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.88373 -36.96341 -34.43542 -34.13324 -31.69025 -29.13228 -27.31004 -25.44111 -24.04870 -21.67622 -18.55336 -18.29803 -17.38744 -16.47072 -16.01693 -15.87209 -14.81359 -14.44447 -14.16219 -13.54789 -13.42004 -13.20308 -12.87274 -12.80279 -12.42866 -12.29461 -11.91527 -11.72745 -11.53520 -10.97509 -10.54821 -10.12357 -10.00685 -8.17195 -6.32802 0.10771 0.29090 1.41001 1.42349 1.50482 2.38879 2.93377 3.08901 3.19423 3.33196 3.85487 4.26539 4.34432 4.54179 4.68266 4.74013 4.83668 4.94165 5.00771 5.14663 5.20308 5.48544 5.64942 5.72895 5.95100 6.17356 6.30042 6.71388 7.30767 7.35449 8.87934 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047695 B = 0.010553 C = 0.009993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.920443 B = 2652.517246 C = 2801.243482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.290 3.710 3 N -0.547 5.547 4 C 0.148 3.852 5 C -0.239 4.239 6 C 0.194 3.806 7 C 0.081 3.919 8 H 0.009 0.991 9 C -0.123 4.123 10 C -0.526 4.526 11 H 0.043 0.957 12 C 0.022 3.978 13 N -0.911 5.911 14 Si 0.960 3.040 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.278 1.278 18 N -0.556 5.556 19 H 0.097 0.903 20 H 0.099 0.901 21 H 0.081 0.919 22 H 0.207 0.793 23 H 0.158 0.842 24 H 0.049 0.951 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.124 9.259 0.933 9.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.023 3.977 3 N -0.263 5.263 4 C -0.017 4.017 5 C -0.261 4.261 6 C 0.050 3.950 7 C 0.062 3.938 8 H 0.028 0.972 9 C -0.181 4.181 10 C -0.564 4.564 11 H 0.061 0.939 12 C -0.178 4.178 13 N -0.549 5.549 14 Si 0.785 3.215 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.203 1.203 18 N -0.272 5.272 19 H 0.116 0.884 20 H 0.118 0.882 21 H 0.100 0.900 22 H 0.223 0.777 23 H 0.176 0.824 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.030 9.084 0.981 9.986 hybrid contribution 1.233 -0.689 -0.775 1.611 sum -2.797 8.395 0.206 8.851 Atomic orbital electron populations 1.20600 0.83669 1.04499 1.04648 1.23998 0.99754 0.83481 0.90511 1.68281 1.10841 1.30037 1.17127 1.23776 0.89455 0.99345 0.89131 1.22937 1.03894 0.93705 1.05543 1.22455 0.89204 0.97841 0.85491 1.17736 0.92579 0.87065 0.96405 0.97242 1.21681 0.98096 1.02424 0.95901 1.21001 1.37738 1.06250 0.91454 0.93908 1.25661 0.95201 0.95726 1.01212 1.69980 1.40035 1.12455 1.32427 0.85588 0.78335 0.77846 0.79767 1.19145 1.20197 1.20344 1.68176 1.10908 1.31482 1.16656 0.88437 0.88226 0.89986 0.77666 0.82422 0.93241 0.95341 0.91408 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.05 10.32 71.24 0.74 -1.32 15 2 C 0.29 10.85 7.64 138.75 1.06 11.91 15 3 N -0.55 -19.01 10.34 -187.83 -1.94 -20.95 15 4 C 0.15 4.66 11.30 84.71 0.96 5.62 15 5 C -0.24 -8.97 9.26 22.44 0.21 -8.76 15 6 C 0.19 8.94 5.76 42.56 0.25 9.19 15 7 C 0.08 4.24 2.65 -12.29 -0.03 4.21 15 8 H 0.01 0.56 8.14 -2.39 -0.02 0.54 15 9 C -0.12 -5.76 8.41 71.98 0.61 -5.16 15 10 C -0.53 -29.38 8.55 25.60 0.22 -29.16 15 11 H 0.04 2.42 7.74 -2.91 -0.02 2.40 15 12 C 0.02 1.20 5.30 84.66 0.45 1.65 15 13 N -0.91 -51.59 11.32 21.45 0.24 -51.35 15 14 Si 0.96 43.26 29.54 68.60 2.03 45.28 15 15 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 16 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 18 N -0.56 -25.13 10.27 -176.02 -1.81 -26.94 15 19 H 0.10 2.25 8.14 -2.39 -0.02 2.23 15 20 H 0.10 2.24 8.14 -2.39 -0.02 2.22 15 21 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 22 H 0.21 4.34 8.06 -2.91 -0.02 4.31 15 23 H 0.16 5.34 6.43 -2.91 -0.02 5.32 15 24 H 0.05 2.10 6.58 -2.39 -0.02 2.09 15 25 H 0.03 1.18 8.14 -2.39 -0.02 1.17 15 26 H 0.07 3.51 6.07 -2.39 -0.01 3.50 15 27 H 0.27 14.26 8.31 -92.71 -0.77 13.49 15 Total: -1.00 -64.41 235.88 4.12 -60.28 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.16 Total: 5.49 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 4.45 Total: -11.82 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -3.51 Total: -99.24 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -64.41 4.12 -60.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042194.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.290 kcal (2) G-P(sol) polarization free energy of solvation -64.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds