Wall clock time and date at job start Mon Mar 30 2020 02:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31804 * 119.12421 * 2 1 4 4 C 1.32326 * 120.81585 * 179.97438 * 3 2 1 5 5 C 1.38623 * 119.10123 * 0.02562 * 4 3 2 6 6 C 1.38569 * 118.40100 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.44876 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47161 * 204.99904 * 7 6 5 9 9 C 1.53002 * 109.46925 * 325.00040 * 7 6 5 10 10 C 1.50697 * 109.47178 * 84.99538 * 7 6 5 11 11 H 1.07998 * 120.00039 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99815 * 180.02562 * 10 7 6 13 13 N 1.31508 * 119.99915 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 119.99777 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47152 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46821 * 119.99784 * 14 12 10 17 17 H 1.48494 * 109.47204 * 240.00116 * 14 12 10 18 18 N 1.31784 * 119.11828 * 180.25276 * 2 1 3 19 19 H 1.08998 * 109.47500 * 89.99716 * 1 2 3 20 20 H 1.08996 * 109.47466 * 210.00275 * 1 2 3 21 21 H 1.09004 * 109.46954 * 330.00425 * 1 2 3 22 22 H 1.07998 * 120.44741 * 180.02562 * 4 3 2 23 23 H 1.08000 * 120.79655 * 180.02562 * 5 4 3 24 24 H 1.09004 * 109.46930 * 299.99901 * 9 7 6 25 25 H 1.09004 * 109.47059 * 59.99503 * 9 7 6 26 26 H 1.08992 * 109.47060 * 179.97438 * 9 7 6 27 27 H 0.97001 * 119.99839 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4712 1.1905 0.0005 5 6 4.1808 -0.0003 0.0005 6 6 3.4712 -1.1905 0.0005 7 6 4.1959 -2.5119 0.0011 8 1 3.5542 -3.2784 -0.4333 9 6 5.4775 -2.3909 -0.8259 10 6 4.5456 -2.8924 1.4167 11 1 4.2702 -2.2426 2.2342 12 6 5.2172 -4.0700 1.6681 13 7 5.5530 -4.8609 0.6725 14 14 5.6501 -4.5420 3.4229 15 1 5.1641 -3.4908 4.3525 16 1 5.0059 -5.8368 3.7604 17 1 7.1236 -4.6739 3.5509 18 7 2.1482 -1.1513 -0.0051 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3633 0.8901 0.5138 22 1 3.9907 2.1373 0.0009 23 1 5.2608 -0.0004 0.0013 24 1 5.2246 -2.1156 -1.8498 25 1 6.1192 -1.6242 -0.3915 26 1 6.0019 -3.3464 -0.8251 27 1 6.0257 -5.6892 0.8493 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260042201.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:21 Heat of formation + Delta-G solvation = 13.838811 kcal Electronic energy + Delta-G solvation = -11565.013578 eV Core-core repulsion = 9514.772803 eV Total energy + Delta-G solvation = -2050.240775 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.88357 -36.96568 -34.43624 -34.13437 -31.69160 -29.13251 -27.31426 -25.44211 -24.04978 -21.67875 -18.56143 -18.29771 -17.38995 -16.46854 -16.01891 -15.87031 -14.82205 -14.44329 -14.16192 -13.55412 -13.42441 -13.20374 -12.90084 -12.78353 -12.41998 -12.29726 -11.92337 -11.72026 -11.53930 -10.96335 -10.55555 -10.12343 -10.00822 -8.17758 -6.33127 0.10794 0.29027 1.39277 1.41327 1.52617 2.38552 2.93281 3.08588 3.19400 3.33152 3.85444 4.26543 4.34402 4.54168 4.68290 4.74014 4.83571 4.94162 5.00737 5.14627 5.20279 5.48654 5.64884 5.72883 5.95075 6.17183 6.29980 6.71569 7.30670 7.35294 8.87814 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047687 B = 0.010554 C = 0.009994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.025456 B = 2652.432338 C = 2800.920602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.290 3.710 3 N -0.547 5.547 4 C 0.148 3.852 5 C -0.239 4.239 6 C 0.194 3.806 7 C 0.081 3.919 8 H 0.010 0.990 9 C -0.123 4.123 10 C -0.524 4.524 11 H 0.042 0.958 12 C 0.021 3.979 13 N -0.911 5.911 14 Si 0.961 3.039 15 H -0.274 1.274 16 H -0.279 1.279 17 H -0.271 1.271 18 N -0.556 5.556 19 H 0.097 0.903 20 H 0.081 0.919 21 H 0.099 0.901 22 H 0.207 0.793 23 H 0.158 0.842 24 H 0.027 0.973 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 9.239 -0.933 9.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.023 3.977 3 N -0.263 5.263 4 C -0.017 4.017 5 C -0.261 4.261 6 C 0.050 3.950 7 C 0.062 3.938 8 H 0.028 0.972 9 C -0.181 4.181 10 C -0.562 4.562 11 H 0.061 0.939 12 C -0.178 4.178 13 N -0.549 5.549 14 Si 0.786 3.214 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.196 1.196 18 N -0.272 5.272 19 H 0.116 0.884 20 H 0.100 0.900 21 H 0.118 0.882 22 H 0.223 0.777 23 H 0.176 0.824 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.048 9.070 -0.986 9.982 hybrid contribution 1.246 -0.695 0.771 1.621 sum -2.803 8.376 -0.216 8.835 Atomic orbital electron populations 1.20599 0.83666 1.04503 1.04650 1.23997 0.99757 0.83482 0.90504 1.68278 1.10845 1.30050 1.17134 1.23780 0.89453 0.99344 0.89131 1.22935 1.03902 0.93709 1.05540 1.22454 0.89212 0.97843 0.85493 1.17746 0.92590 0.87071 0.96425 0.97209 1.21682 0.98094 1.02429 0.95905 1.21053 1.37637 1.06088 0.91452 0.93933 1.25663 0.95208 0.95759 1.01213 1.69993 1.40111 1.12517 1.32324 0.85465 0.78276 0.77989 0.79673 1.19829 1.20462 1.19591 1.68182 1.10898 1.31468 1.16664 0.88438 0.89972 0.88229 0.77659 0.82416 0.95347 0.93230 0.91408 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.05 10.32 71.23 0.74 -1.32 15 2 C 0.29 10.85 7.64 138.75 1.06 11.91 15 3 N -0.55 -19.03 10.33 -187.84 -1.94 -20.98 15 4 C 0.15 4.67 11.31 84.71 0.96 5.62 15 5 C -0.24 -8.97 9.26 22.44 0.21 -8.77 15 6 C 0.19 8.94 5.76 42.56 0.25 9.19 15 7 C 0.08 4.22 2.65 -12.28 -0.03 4.18 15 8 H 0.01 0.58 8.14 -2.39 -0.02 0.56 15 9 C -0.12 -5.77 8.42 71.98 0.61 -5.16 15 10 C -0.52 -29.27 8.55 25.60 0.22 -29.05 15 11 H 0.04 2.42 7.74 -2.91 -0.02 2.40 15 12 C 0.02 1.17 5.30 84.66 0.45 1.62 15 13 N -0.91 -51.57 11.32 21.45 0.24 -51.33 15 14 Si 0.96 43.33 29.54 68.60 2.03 45.36 15 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 16 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 18 N -0.56 -25.12 10.27 -176.03 -1.81 -26.93 15 19 H 0.10 2.25 8.14 -2.39 -0.02 2.23 15 20 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 21 H 0.10 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.21 4.34 8.06 -2.91 -0.02 4.32 15 23 H 0.16 5.34 6.44 -2.91 -0.02 5.32 15 24 H 0.03 1.18 8.14 -2.38 -0.02 1.16 15 25 H 0.05 2.11 6.58 -2.39 -0.02 2.09 15 26 H 0.07 3.51 6.07 -2.39 -0.01 3.50 15 27 H 0.27 14.17 8.31 -92.71 -0.77 13.40 15 Total: -1.00 -64.52 235.89 4.12 -60.39 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.16 Total: 5.25 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 4.45 Total: -11.76 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -3.51 Total: -99.23 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -64.52 4.12 -60.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042201.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.233 kcal (2) G-P(sol) polarization free energy of solvation -64.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds