Wall clock time and date at job start Mon Mar 30 2020 02:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36222 * 125.68536 * 2 1 4 4 N 1.36417 * 107.19174 * 179.75672 * 3 2 1 5 5 C 1.46500 * 126.55789 * 180.28721 * 4 3 2 6 6 C 1.52998 * 117.49706 * 8.90368 * 5 4 3 7 7 C 1.53005 * 117.50027 * 300.24127 * 5 4 3 8 8 C 1.37542 * 106.88897 * 0.42118 * 4 3 2 9 9 C 1.39997 * 125.96572 * 179.84397 * 8 4 3 10 10 H 1.08000 * 120.00133 * 5.81518 * 9 8 4 11 11 C 1.40238 * 119.99929 * 185.82108 * 9 8 4 12 12 N 1.30691 * 119.99612 * 175.15829 * 11 9 8 13 13 Si 1.86797 * 120.00099 * 355.16132 * 11 9 8 14 14 H 1.48492 * 109.47543 * 59.99799 * 13 11 9 15 15 H 1.48505 * 109.46953 * 299.99668 * 13 11 9 16 16 H 1.48498 * 109.47338 * 180.02562 * 13 11 9 17 17 N 1.32757 * 125.69437 * 180.02562 * 2 1 3 18 18 H 1.09003 * 109.46849 * 269.99243 * 1 2 3 19 19 H 1.08998 * 109.47378 * 29.99982 * 1 2 3 20 20 H 1.09004 * 109.46837 * 150.00187 * 1 2 3 21 21 H 1.07997 * 126.40672 * 0.02562 * 3 2 1 22 22 H 1.08999 * 115.55340 * 154.57111 * 5 4 3 23 23 H 1.09004 * 117.50138 * 359.97438 * 6 5 4 24 24 H 1.09003 * 117.50027 * 145.02345 * 6 5 4 25 25 H 1.08995 * 117.49845 * 214.98076 * 7 5 4 26 26 H 1.08998 * 117.49307 * 359.97438 * 7 5 4 27 27 H 0.96994 * 120.00398 * 5.09628 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3016 1.1064 0.0000 4 7 3.5953 0.6737 0.0055 5 6 4.7961 1.5129 0.0135 6 6 4.6060 3.0161 0.2260 7 6 4.9896 2.4806 -1.1558 8 6 3.5569 -0.7011 -0.0009 9 6 4.6665 -1.5547 -0.0014 10 1 5.6616 -1.1469 0.0983 11 6 4.4860 -2.9393 -0.1314 12 7 5.5241 -3.7275 -0.2271 13 14 2.7618 -3.6571 -0.1680 14 1 2.0130 -3.0882 -1.3172 15 1 2.0587 -3.3209 1.0961 16 1 2.8428 -5.1329 -0.3112 17 7 2.2816 -1.0782 -0.0005 18 1 -0.3633 -0.0001 1.0277 19 1 -0.3634 0.8899 -0.5138 20 1 -0.3633 -0.8901 -0.5138 21 1 1.9695 2.1341 0.0004 22 1 5.6881 1.0534 0.4392 23 1 3.5874 3.3807 0.3595 24 1 5.3731 3.5455 0.7911 25 1 6.0087 2.6578 -1.4991 26 1 4.2236 2.4924 -1.9312 27 1 6.4188 -3.3646 -0.1341 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122944.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:23 Heat of formation + Delta-G solvation = 62.152360 kcal Electronic energy + Delta-G solvation = -11780.965452 eV Core-core repulsion = 9732.819710 eV Total energy + Delta-G solvation = -2048.145743 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.42332 -36.62822 -33.55564 -31.47491 -29.80350 -27.24310 -24.37221 -22.23839 -21.65756 -19.77201 -18.57323 -17.76043 -16.05532 -14.80871 -13.89666 -13.77342 -13.51350 -12.98526 -12.33227 -12.24684 -12.15553 -11.57198 -11.39152 -11.20518 -10.88925 -10.42892 -10.19928 -10.11049 -9.49128 -9.01527 -8.13942 -7.88052 -7.28629 -7.16821 -4.50826 3.14637 3.71488 3.77081 3.89198 4.16215 4.18736 4.40816 4.58370 5.00191 5.14386 5.22214 5.44511 5.71507 5.81977 5.89830 6.06137 6.17797 6.19542 6.31056 6.36331 6.53223 6.96526 7.24662 7.62745 7.77953 8.05863 8.38245 8.73289 8.95488 9.68116 10.23775 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.033746 B = 0.016780 C = 0.011603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.528728 B = 1668.224492 C = 2412.486761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.029 3.971 3 C -0.158 4.158 4 N -0.476 5.476 5 C 0.098 3.902 6 C -0.186 4.186 7 C -0.191 4.191 8 C 0.382 3.618 9 C -0.508 4.508 10 H 0.077 0.923 11 C 0.061 3.939 12 N -0.825 5.825 13 Si 1.135 2.865 14 H -0.279 1.279 15 H -0.281 1.281 16 H -0.326 1.326 17 N -0.594 5.594 18 H 0.055 0.945 19 H 0.054 0.946 20 H 0.059 0.941 21 H 0.140 0.860 22 H 0.128 0.872 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 9.212 0.077 9.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C -0.287 4.287 4 N -0.164 5.164 5 C -0.009 4.009 6 C -0.224 4.224 7 C -0.230 4.230 8 C 0.141 3.859 9 C -0.548 4.548 10 H 0.095 0.905 11 C -0.159 4.159 12 N -0.450 5.450 13 Si 0.968 3.032 14 H -0.206 1.206 15 H -0.208 1.208 16 H -0.258 1.258 17 N -0.322 5.322 18 H 0.074 0.926 19 H 0.073 0.927 20 H 0.078 0.922 21 H 0.158 0.842 22 H 0.146 0.854 23 H 0.115 0.885 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.485 7.166 -0.098 7.969 hybrid contribution 1.470 2.634 0.201 3.023 sum -2.015 9.800 0.103 10.006 Atomic orbital electron populations 1.19915 0.89987 1.01110 1.00788 1.20272 0.94808 0.89416 1.05602 1.21517 0.83659 0.97987 1.25493 1.44483 1.03469 1.06290 1.62189 1.21428 0.89942 0.87031 1.02475 1.23278 1.03055 0.96099 0.99965 1.23382 1.02726 1.04594 0.92279 1.20326 0.92689 0.78876 0.94042 1.19388 0.91622 0.92808 1.50998 0.90537 1.27333 1.07165 0.92939 0.88465 1.70652 1.00515 1.39625 1.34200 0.82263 0.70783 0.70165 0.80005 1.20609 1.20818 1.25836 1.69375 0.99723 1.27796 1.35299 0.92618 0.92717 0.92174 0.84239 0.85403 0.88483 0.88257 0.88355 0.88615 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.11 10.42 36.01 0.38 -0.73 15 2 C 0.03 0.69 7.07 -82.92 -0.59 0.10 15 3 C -0.16 -3.51 10.80 -16.24 -0.18 -3.69 15 4 N -0.48 -11.24 3.14 -108.88 -0.34 -11.58 15 5 C 0.10 1.86 6.57 -67.93 -0.45 1.41 15 6 C -0.19 -2.74 10.00 -26.69 -0.27 -3.01 15 7 C -0.19 -2.99 10.41 -26.69 -0.28 -3.27 15 8 C 0.38 10.45 7.21 -155.60 -1.12 9.33 15 9 C -0.51 -14.36 9.50 -38.17 -0.36 -14.72 15 10 H 0.08 2.12 7.41 -52.49 -0.39 1.73 15 11 C 0.06 1.74 5.52 -17.29 -0.10 1.64 15 12 N -0.82 -23.41 13.65 55.56 0.76 -22.65 15 13 Si 1.14 29.71 25.73 -169.99 -4.37 25.34 15 14 H -0.28 -7.43 6.94 56.52 0.39 -7.04 15 15 H -0.28 -7.45 7.08 56.52 0.40 -7.05 15 16 H -0.33 -8.30 7.11 56.52 0.40 -7.90 15 17 N -0.59 -16.27 6.45 -8.95 -0.06 -16.33 15 18 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 19 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 20 H 0.06 1.11 8.14 -51.93 -0.42 0.68 15 21 H 0.14 2.63 7.13 -52.49 -0.37 2.25 15 22 H 0.13 2.42 7.56 -51.93 -0.39 2.02 15 23 H 0.10 1.42 6.90 -51.93 -0.36 1.07 15 24 H 0.10 1.21 8.14 -51.93 -0.42 0.79 15 25 H 0.10 1.32 8.14 -51.93 -0.42 0.89 15 26 H 0.10 1.58 8.14 -51.93 -0.42 1.16 15 27 H 0.28 7.55 8.72 -40.82 -0.36 7.20 15 LS Contribution 234.17 15.07 3.53 3.53 Total: -1.00 -31.21 234.17 -6.66 -37.86 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -3.21 Total: -3.24 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -2.96 Total: -12.93 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.36 Total: -50.56 kcal Atomic # 14 Polarization: 29.71 SS G_CDS: -4.37 Total: 25.34 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.21 -6.66 -37.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122944.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.016 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds