Wall clock time and date at job start Mon Mar 30 2020 02:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36222 * 125.68536 * 2 1 4 4 N 1.36417 * 107.19174 * 179.75672 * 3 2 1 5 5 C 1.46500 * 126.55789 * 180.28721 * 4 3 2 6 6 C 1.52998 * 117.49706 * 8.90368 * 5 4 3 7 7 C 1.53005 * 117.50027 * 300.24127 * 5 4 3 8 8 C 1.37542 * 106.88897 * 0.42118 * 4 3 2 9 9 C 1.39997 * 125.96572 * 179.84397 * 8 4 3 10 10 H 1.08000 * 120.00133 * 5.81518 * 9 8 4 11 11 C 1.40238 * 119.99929 * 185.82108 * 9 8 4 12 12 N 1.30691 * 119.99612 * 175.15829 * 11 9 8 13 13 Si 1.86797 * 120.00099 * 355.16132 * 11 9 8 14 14 H 1.48492 * 109.47543 * 59.99799 * 13 11 9 15 15 H 1.48505 * 109.46953 * 299.99668 * 13 11 9 16 16 H 1.48498 * 109.47338 * 180.02562 * 13 11 9 17 17 N 1.32757 * 125.69437 * 180.02562 * 2 1 3 18 18 H 1.09003 * 109.46849 * 269.99243 * 1 2 3 19 19 H 1.08998 * 109.47378 * 29.99982 * 1 2 3 20 20 H 1.09004 * 109.46837 * 150.00187 * 1 2 3 21 21 H 1.07997 * 126.40672 * 0.02562 * 3 2 1 22 22 H 1.08999 * 115.55340 * 154.57111 * 5 4 3 23 23 H 1.09004 * 117.50138 * 359.97438 * 6 5 4 24 24 H 1.09003 * 117.50027 * 145.02345 * 6 5 4 25 25 H 1.08995 * 117.49845 * 214.98076 * 7 5 4 26 26 H 1.08998 * 117.49307 * 359.97438 * 7 5 4 27 27 H 0.96994 * 120.00398 * 5.09628 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3016 1.1064 0.0000 4 7 3.5953 0.6737 0.0055 5 6 4.7961 1.5129 0.0135 6 6 4.6060 3.0161 0.2260 7 6 4.9896 2.4806 -1.1558 8 6 3.5569 -0.7011 -0.0009 9 6 4.6665 -1.5547 -0.0014 10 1 5.6616 -1.1469 0.0983 11 6 4.4860 -2.9393 -0.1314 12 7 5.5241 -3.7275 -0.2271 13 14 2.7618 -3.6571 -0.1680 14 1 2.0130 -3.0882 -1.3172 15 1 2.0587 -3.3209 1.0961 16 1 2.8428 -5.1329 -0.3112 17 7 2.2816 -1.0782 -0.0005 18 1 -0.3633 -0.0001 1.0277 19 1 -0.3634 0.8899 -0.5138 20 1 -0.3633 -0.8901 -0.5138 21 1 1.9695 2.1341 0.0004 22 1 5.6881 1.0534 0.4392 23 1 3.5874 3.3807 0.3595 24 1 5.3731 3.5455 0.7911 25 1 6.0087 2.6578 -1.4991 26 1 4.2236 2.4924 -1.9312 27 1 6.4188 -3.3646 -0.1341 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122944.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:23 Heat of formation + Delta-G solvation = 43.244432 kcal Electronic energy + Delta-G solvation = -11781.785361 eV Core-core repulsion = 9732.819710 eV Total energy + Delta-G solvation = -2048.965652 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.26803 -38.05693 -35.63400 -33.15896 -31.69452 -29.01565 -26.18144 -23.50325 -23.26739 -21.68359 -20.38494 -19.69336 -17.73871 -16.24432 -15.77307 -15.62266 -15.42936 -14.74893 -14.05920 -13.91497 -13.64095 -13.29270 -12.88618 -12.81913 -12.53764 -12.23335 -11.78664 -11.73325 -11.46877 -11.15199 -9.92874 -9.87286 -9.32651 -9.17686 -6.56719 1.26167 1.60255 1.77012 2.03765 2.26435 2.40679 2.51221 2.80707 3.27988 3.62177 3.87965 3.97436 4.17211 4.36467 4.57422 4.67577 4.75899 4.87639 4.97181 5.06934 5.08801 5.16734 5.41482 5.51393 5.87290 6.09894 6.45726 6.71175 7.01747 7.75316 8.10891 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.033746 B = 0.016780 C = 0.011603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.528728 B = 1668.224492 C = 2412.486761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.013 4.013 3 C -0.135 4.135 4 N -0.472 5.472 5 C 0.040 3.960 6 C -0.147 4.147 7 C -0.175 4.175 8 C 0.346 3.654 9 C -0.530 4.530 10 H 0.065 0.935 11 C 0.030 3.970 12 N -0.849 5.849 13 Si 1.173 2.827 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.318 1.318 17 N -0.617 5.617 18 H 0.069 0.931 19 H 0.088 0.912 20 H 0.053 0.947 21 H 0.182 0.818 22 H 0.117 0.883 23 H 0.105 0.895 24 H 0.132 0.868 25 H 0.122 0.878 26 H 0.089 0.911 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.558 11.944 0.048 12.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.141 4.141 3 C -0.264 4.264 4 N -0.158 5.158 5 C -0.065 4.065 6 C -0.184 4.184 7 C -0.213 4.213 8 C 0.100 3.900 9 C -0.570 4.570 10 H 0.083 0.917 11 C -0.185 4.185 12 N -0.476 5.476 13 Si 1.005 2.995 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.250 1.250 17 N -0.346 5.346 18 H 0.088 0.912 19 H 0.107 0.893 20 H 0.072 0.928 21 H 0.200 0.800 22 H 0.135 0.865 23 H 0.124 0.876 24 H 0.150 0.850 25 H 0.141 0.859 26 H 0.107 0.893 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.504 9.930 -0.128 10.904 hybrid contribution 1.744 2.043 0.217 2.695 sum -2.760 11.972 0.089 12.287 Atomic orbital electron populations 1.20007 0.86564 1.02506 1.02158 1.21188 0.97293 0.88896 1.06771 1.22256 0.82823 0.99615 1.21683 1.44758 1.05424 1.05679 1.59895 1.21817 0.88576 0.89036 1.07085 1.23431 1.04576 0.91640 0.98798 1.23447 1.04073 1.01692 0.92082 1.20296 0.92618 0.80759 0.96279 1.19346 0.91712 0.93206 1.52708 0.91682 1.27925 1.08465 0.93528 0.88585 1.70661 1.00562 1.39717 1.36630 0.81713 0.68843 0.70039 0.78888 1.21722 1.21787 1.24999 1.69260 1.00360 1.30106 1.34828 0.91181 0.89319 0.92822 0.80049 0.86495 0.87642 0.85031 0.85946 0.89293 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.86 10.42 71.24 0.74 -1.12 15 2 C -0.01 -0.58 7.07 41.95 0.30 -0.28 15 3 C -0.13 -5.57 10.80 83.51 0.90 -4.67 15 4 N -0.47 -21.63 3.14 -498.38 -1.57 -23.20 15 5 C 0.04 1.43 6.57 44.99 0.30 1.73 15 6 C -0.15 -3.65 10.00 30.62 0.31 -3.34 15 7 C -0.17 -4.87 10.41 30.62 0.32 -4.55 15 8 C 0.35 19.10 7.21 133.59 0.96 20.07 15 9 C -0.53 -30.90 9.50 23.18 0.22 -30.68 15 10 H 0.06 3.79 7.41 -2.91 -0.02 3.77 15 11 C 0.03 1.79 5.52 85.35 0.47 2.26 15 12 N -0.85 -49.64 13.65 21.88 0.30 -49.34 15 13 Si 1.17 62.06 25.73 68.60 1.76 63.83 15 14 H -0.29 -15.57 6.94 99.48 0.69 -14.88 15 15 H -0.29 -15.53 7.08 99.48 0.70 -14.82 15 16 H -0.32 -16.09 7.11 99.48 0.71 -15.38 15 17 N -0.62 -33.72 6.45 -182.22 -1.18 -34.89 15 18 H 0.07 2.16 8.14 -2.39 -0.02 2.14 15 19 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 20 H 0.05 1.87 8.14 -2.38 -0.02 1.85 15 21 H 0.18 5.85 7.13 -2.91 -0.02 5.83 15 22 H 0.12 4.42 7.56 -2.39 -0.02 4.40 15 23 H 0.11 2.49 6.90 -2.38 -0.02 2.47 15 24 H 0.13 2.48 8.14 -2.39 -0.02 2.46 15 25 H 0.12 2.82 8.14 -2.39 -0.02 2.80 15 26 H 0.09 2.63 8.14 -2.39 -0.02 2.62 15 27 H 0.28 15.63 8.72 -92.71 -0.81 14.82 15 Total: -1.00 -68.72 234.17 4.94 -63.78 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: 1.10 Total: 0.41 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 4.52 Total: -20.58 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -2.44 Total: -107.43 kcal Atomic # 14 Polarization: 62.06 SS G_CDS: 1.76 Total: 63.83 kcal Total: -68.72 4.94 -63.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122944.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.021 kcal (2) G-P(sol) polarization free energy of solvation -68.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds