Wall clock time and date at job start Mon Mar 30 2020 02:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37476 * 126.56576 * 2 1 4 4 C 1.39995 * 125.96277 * 0.02562 * 3 2 1 5 5 H 1.07998 * 119.99498 * 0.02562 * 4 3 2 6 6 C 1.40236 * 120.00098 * 179.97438 * 4 3 2 7 7 N 1.30691 * 120.00003 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99889 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.47071 * 59.99782 * 8 6 4 10 10 H 1.48500 * 109.46872 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46791 * 300.00016 * 8 6 4 12 12 N 1.32882 * 108.07919 * 179.97438 * 3 2 1 13 13 C 1.33174 * 109.30775 * 0.02562 * 12 3 2 14 14 C 1.36061 * 108.39724 * 359.74145 * 13 12 3 15 15 C 1.51220 * 110.27785 * 180.33991 * 14 13 12 16 16 C 1.54433 * 105.00992 * 17.10830 * 15 14 13 17 17 C 1.51441 * 141.61550 * 179.97438 * 13 12 3 18 18 H 1.09002 * 109.47391 * 90.02093 * 1 2 3 19 19 H 1.09001 * 109.46813 * 330.02149 * 1 2 3 20 20 H 1.09004 * 109.47041 * 210.02276 * 1 2 3 21 21 H 0.97001 * 119.99688 * 179.97438 * 7 6 4 22 22 H 1.09003 * 110.33320 * 135.99186 * 15 14 13 23 23 H 1.08998 * 110.33509 * 258.11701 * 15 14 13 24 24 H 1.09005 * 110.87145 * 92.29173 * 16 15 14 25 25 H 1.08995 * 110.86963 * 215.76847 * 16 15 14 26 26 H 1.08992 * 110.32040 * 281.90257 * 17 13 12 27 27 H 1.09000 * 110.32234 * 44.10596 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2840 1.1042 0.0000 4 6 1.8637 2.4395 0.0005 5 1 0.8094 2.6737 0.0014 6 6 2.8116 3.4730 0.0010 7 7 4.0874 3.1895 0.0015 8 14 2.2507 5.2548 0.0024 9 1 1.4346 5.5159 1.2153 10 1 3.4376 6.1473 0.0033 11 1 1.4340 5.5176 -1.2097 12 7 3.5442 0.6828 0.0006 13 6 3.5633 -0.6488 0.0004 14 6 2.2786 -1.0966 0.0055 15 6 2.2506 -2.6086 0.0139 16 6 3.6695 -3.0324 0.4521 17 6 4.5206 -1.8223 0.0002 18 1 -0.3634 -0.0004 -1.0277 19 1 -0.3633 0.8902 0.5135 20 1 -0.3633 -0.8898 0.5142 21 1 4.7430 3.9044 0.0014 22 1 1.5101 -2.9698 0.7275 23 1 2.0312 -2.9889 -0.9838 24 1 3.7182 -3.1672 1.5327 25 1 3.9808 -3.9399 -0.0651 26 1 4.9233 -1.9822 -0.9999 27 1 5.3286 -1.6518 0.7117 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260126239.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:23 Heat of formation + Delta-G solvation = 59.334562 kcal Electronic energy + Delta-G solvation = -11803.731773 eV Core-core repulsion = 9755.463842 eV Total energy + Delta-G solvation = -2048.267931 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -40.16687 -35.42943 -33.17045 -31.97278 -27.97075 -27.12769 -25.20601 -24.41862 -20.53809 -18.97947 -18.06590 -16.54306 -15.32161 -14.95893 -14.48651 -13.73967 -13.14345 -12.69180 -12.10172 -11.80408 -11.68564 -11.58395 -11.15952 -11.10872 -10.66367 -10.41085 -10.40136 -10.26889 -10.04195 -9.08405 -7.75480 -7.55026 -6.78735 -6.33687 -4.19711 3.09194 3.17922 3.19479 3.63744 4.03282 4.36513 4.69178 5.32591 5.51455 5.56908 5.66490 5.74909 6.04996 6.09019 6.18876 6.19466 6.34682 6.48814 6.54173 6.66607 6.84606 7.26443 7.47502 7.76689 8.15179 8.30278 8.62827 9.02075 9.41813 10.30993 10.59038 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.058785 B = 0.011841 C = 0.009992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.200994 B = 2364.018841 C = 2801.687845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.493 5.493 3 C 0.384 3.616 4 C -0.465 4.465 5 H 0.078 0.922 6 C 0.082 3.918 7 N -0.743 5.743 8 Si 0.911 3.089 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.268 1.268 12 N -0.501 5.501 13 C -0.004 4.004 14 C -0.184 4.184 15 C -0.007 4.007 16 C -0.112 4.112 17 C -0.027 4.027 18 H 0.047 0.953 19 H 0.072 0.928 20 H 0.056 0.944 21 H 0.272 0.728 22 H 0.044 0.956 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 -5.518 0.263 6.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.183 5.183 3 C 0.142 3.858 4 C -0.505 4.505 5 H 0.096 0.904 6 C -0.141 4.141 7 N -0.368 5.368 8 Si 0.736 3.264 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.193 1.193 12 N -0.222 5.222 13 C -0.138 4.138 14 C -0.296 4.296 15 C -0.046 4.046 16 C -0.150 4.150 17 C -0.066 4.066 18 H 0.066 0.934 19 H 0.090 0.910 20 H 0.075 0.925 21 H 0.083 0.917 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.810 -4.983 0.263 5.727 hybrid contribution -1.183 0.361 -0.032 1.238 sum -3.993 -4.622 0.230 6.112 Atomic orbital electron populations 1.21429 0.80479 1.01858 1.00771 1.44660 1.04501 1.05641 1.63467 1.20217 0.82499 0.87197 0.95881 1.18036 0.94029 0.86805 1.51580 0.90410 1.25680 0.94398 1.00437 0.93608 1.70018 1.00917 1.33578 1.32303 0.86356 0.78826 0.81778 0.79455 1.19279 1.20360 1.19270 1.70779 1.17564 1.05884 1.27975 1.21467 0.92634 0.92943 1.06717 1.20833 0.92712 0.90290 1.25724 1.19980 0.96431 0.88988 0.99182 1.22324 0.95006 0.97206 1.00497 1.20205 0.95792 0.90355 1.00241 0.93430 0.90961 0.92531 0.91714 0.93690 0.93003 0.91628 0.91487 0.91857 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.95 10.96 59.85 0.66 2.60 15 2 N -0.49 -12.58 3.21 -118.61 -0.38 -12.96 15 3 C 0.38 11.25 7.43 -155.75 -1.16 10.10 15 4 C -0.46 -13.07 9.00 -38.17 -0.34 -13.41 15 5 H 0.08 2.00 7.16 -52.49 -0.38 1.62 15 6 C 0.08 2.23 5.50 -17.29 -0.10 2.13 15 7 N -0.74 -21.42 11.90 55.56 0.66 -20.76 15 8 Si 0.91 19.57 29.56 -169.99 -5.03 14.54 15 9 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 10 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 11 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 12 N -0.50 -15.33 9.41 -8.70 -0.08 -15.41 15 13 C 0.00 -0.10 7.96 -82.43 -0.66 -0.76 15 14 C -0.18 -4.50 7.65 -81.02 -0.62 -5.12 15 15 C -0.01 -0.13 6.78 -26.88 -0.18 -0.32 15 16 C -0.11 -1.85 7.13 -25.09 -0.18 -2.03 15 17 C -0.03 -0.56 6.80 -26.63 -0.18 -0.74 15 18 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 19 H 0.07 1.35 7.37 -51.93 -0.38 0.97 15 20 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 21 H 0.27 7.12 8.29 -40.82 -0.34 6.78 15 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 27 H 0.06 1.17 8.14 -51.93 -0.42 0.74 15 LS Contribution 232.56 15.07 3.50 3.50 Total: -1.00 -33.38 232.56 -7.36 -40.74 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -3.27 Total: -2.11 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -2.76 Total: -7.55 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.20 Total: -49.13 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -33.38 -7.36 -40.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260126239.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.071 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds