Wall clock time and date at job start Mon Mar 30 2020 02:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37476 * 126.56576 * 2 1 4 4 C 1.39995 * 125.96277 * 0.02562 * 3 2 1 5 5 H 1.07998 * 119.99498 * 0.02562 * 4 3 2 6 6 C 1.40236 * 120.00098 * 179.97438 * 4 3 2 7 7 N 1.30691 * 120.00003 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99889 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.47071 * 59.99782 * 8 6 4 10 10 H 1.48500 * 109.46872 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46791 * 300.00016 * 8 6 4 12 12 N 1.32882 * 108.07919 * 179.97438 * 3 2 1 13 13 C 1.33174 * 109.30775 * 0.02562 * 12 3 2 14 14 C 1.36061 * 108.39724 * 359.74145 * 13 12 3 15 15 C 1.51220 * 110.27785 * 180.33991 * 14 13 12 16 16 C 1.54433 * 105.00992 * 17.10830 * 15 14 13 17 17 C 1.51441 * 141.61550 * 179.97438 * 13 12 3 18 18 H 1.09002 * 109.47391 * 90.02093 * 1 2 3 19 19 H 1.09001 * 109.46813 * 330.02149 * 1 2 3 20 20 H 1.09004 * 109.47041 * 210.02276 * 1 2 3 21 21 H 0.97001 * 119.99688 * 179.97438 * 7 6 4 22 22 H 1.09003 * 110.33320 * 135.99186 * 15 14 13 23 23 H 1.08998 * 110.33509 * 258.11701 * 15 14 13 24 24 H 1.09005 * 110.87145 * 92.29173 * 16 15 14 25 25 H 1.08995 * 110.86963 * 215.76847 * 16 15 14 26 26 H 1.08992 * 110.32040 * 281.90257 * 17 13 12 27 27 H 1.09000 * 110.32234 * 44.10596 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2840 1.1042 0.0000 4 6 1.8637 2.4395 0.0005 5 1 0.8094 2.6737 0.0014 6 6 2.8116 3.4730 0.0010 7 7 4.0874 3.1895 0.0015 8 14 2.2507 5.2548 0.0024 9 1 1.4346 5.5159 1.2153 10 1 3.4376 6.1473 0.0033 11 1 1.4340 5.5176 -1.2097 12 7 3.5442 0.6828 0.0006 13 6 3.5633 -0.6488 0.0004 14 6 2.2786 -1.0966 0.0055 15 6 2.2506 -2.6086 0.0139 16 6 3.6695 -3.0324 0.4521 17 6 4.5206 -1.8223 0.0002 18 1 -0.3634 -0.0004 -1.0277 19 1 -0.3633 0.8902 0.5135 20 1 -0.3633 -0.8898 0.5142 21 1 4.7430 3.9044 0.0014 22 1 1.5101 -2.9698 0.7275 23 1 2.0312 -2.9889 -0.9838 24 1 3.7182 -3.1672 1.5327 25 1 3.9808 -3.9399 -0.0651 26 1 4.9233 -1.9822 -0.9999 27 1 5.3286 -1.6518 0.7117 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260126239.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:21 Heat of formation + Delta-G solvation = 37.780467 kcal Electronic energy + Delta-G solvation = -11804.666429 eV Core-core repulsion = 9755.463842 eV Total energy + Delta-G solvation = -2049.202587 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.07054 -37.06979 -35.14095 -33.84118 -29.91976 -28.74494 -26.95238 -26.20414 -22.32107 -20.71800 -19.94907 -18.53871 -17.16827 -16.59065 -16.25007 -15.34918 -14.89036 -14.44429 -13.65746 -13.47851 -13.32836 -13.22842 -12.91034 -12.79379 -12.42729 -12.27456 -11.87735 -11.85834 -11.66278 -10.99643 -9.73805 -9.58068 -8.76558 -8.32598 -6.26255 1.36708 1.41630 1.56018 1.78043 2.24074 2.56948 2.70252 3.58139 3.75512 4.00210 4.21429 4.29132 4.46061 4.53191 4.67243 4.76245 4.92879 5.02191 5.08438 5.18220 5.26201 5.46238 5.54575 5.82221 6.20229 6.32328 6.70229 7.01787 7.43929 8.31435 8.63441 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.058785 B = 0.011841 C = 0.009992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.200994 B = 2364.018841 C = 2801.687845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.502 5.502 3 C 0.341 3.659 4 C -0.497 4.497 5 H 0.091 0.909 6 C 0.029 3.971 7 N -0.796 5.796 8 Si 0.998 3.002 9 H -0.257 1.257 10 H -0.273 1.273 11 H -0.257 1.257 12 N -0.554 5.554 13 C -0.068 4.068 14 C -0.173 4.173 15 C -0.005 4.005 16 C -0.095 4.095 17 C -0.028 4.028 18 H 0.063 0.937 19 H 0.075 0.925 20 H 0.088 0.912 21 H 0.275 0.725 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 -6.757 0.318 8.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.190 5.190 3 C 0.097 3.903 4 C -0.536 4.536 5 H 0.109 0.891 6 C -0.189 4.189 7 N -0.422 5.422 8 Si 0.818 3.182 9 H -0.181 1.181 10 H -0.197 1.197 11 H -0.182 1.182 12 N -0.276 5.276 13 C -0.199 4.199 14 C -0.286 4.286 15 C -0.044 4.044 16 C -0.133 4.133 17 C -0.067 4.067 18 H 0.081 0.919 19 H 0.094 0.906 20 H 0.106 0.894 21 H 0.085 0.915 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.129 0.871 26 H 0.088 0.912 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.286 -6.264 0.318 7.597 hybrid contribution -0.766 0.602 -0.062 0.976 sum -5.052 -5.662 0.256 7.593 Atomic orbital electron populations 1.21735 0.77353 1.03615 1.02321 1.45017 1.06653 1.05191 1.62160 1.20615 0.83285 0.88662 0.97766 1.18513 0.95021 0.87337 1.52734 0.89134 1.26821 0.94129 1.05640 0.92335 1.70184 1.02556 1.35390 1.34096 0.85053 0.78478 0.74693 0.80002 1.18126 1.19730 1.18153 1.70610 1.19244 1.08655 1.29090 1.22520 0.95955 0.92796 1.08678 1.22014 0.92036 0.92907 1.21669 1.20238 0.98522 0.84402 1.01211 1.22358 0.92485 0.96812 1.01667 1.20407 0.95578 0.89886 1.00818 0.91868 0.90649 0.89362 0.91478 0.91196 0.90926 0.90600 0.87080 0.91179 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.47 10.96 127.77 1.40 4.87 15 2 N -0.50 -25.53 3.21 -529.18 -1.70 -27.23 15 3 C 0.34 20.62 7.43 133.64 0.99 21.62 15 4 C -0.50 -28.72 9.00 23.18 0.21 -28.51 15 5 H 0.09 4.73 7.16 -2.91 -0.02 4.71 15 6 C 0.03 1.62 5.50 85.35 0.47 2.09 15 7 N -0.80 -47.94 11.90 21.88 0.26 -47.68 15 8 Si 1.00 40.83 29.56 68.60 2.03 42.86 15 9 H -0.26 -9.95 7.11 99.48 0.71 -9.25 15 10 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 11 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 12 N -0.55 -35.33 9.41 -181.45 -1.71 -37.04 15 13 C -0.07 -3.65 7.96 42.08 0.34 -3.31 15 14 C -0.17 -8.31 7.65 41.48 0.32 -8.00 15 15 C -0.01 -0.18 6.78 30.50 0.21 0.03 15 16 C -0.10 -2.78 7.13 31.66 0.23 -2.56 15 17 C -0.03 -1.14 6.80 30.66 0.21 -0.93 15 18 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 19 H 0.07 2.75 7.37 -2.39 -0.02 2.73 15 20 H 0.09 2.72 8.14 -2.38 -0.02 2.70 15 21 H 0.28 15.07 8.29 -92.71 -0.77 14.30 15 22 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 23 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 24 H 0.08 2.07 8.14 -2.38 -0.02 2.05 15 25 H 0.11 2.33 8.14 -2.39 -0.02 2.31 15 26 H 0.07 2.62 8.14 -2.39 -0.02 2.60 15 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 Total: -1.00 -76.80 232.56 4.40 -72.40 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.16 Total: 11.38 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 4.36 Total: -14.69 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -3.15 Total: -111.94 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -76.80 4.40 -72.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260126239.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.179 kcal (2) G-P(sol) polarization free energy of solvation -76.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds