Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46935 * 2 1 4 4 C 1.50696 * 109.47315 * 240.00053 * 2 1 3 5 5 H 1.08001 * 119.99645 * 236.27106 * 4 2 1 6 6 C 1.37876 * 120.00191 * 56.26400 * 4 2 1 7 7 N 1.31515 * 119.99610 * 6.62748 * 6 4 2 8 8 Si 1.86797 * 120.00109 * 186.61736 * 6 4 2 9 9 H 1.48504 * 109.46648 * 85.11401 * 8 6 4 10 10 H 1.48499 * 109.47488 * 205.11204 * 8 6 4 11 11 H 1.48498 * 109.47255 * 325.11668 * 8 6 4 12 12 C 1.50698 * 109.46799 * 119.99641 * 2 1 3 13 13 C 1.38612 * 120.45156 * 285.02650 * 12 2 1 14 14 C 1.38575 * 118.40291 * 179.97438 * 13 12 2 15 15 N 1.32353 * 119.10292 * 359.72559 * 14 13 12 16 16 C 1.31775 * 120.81860 * 0.54769 * 15 14 13 17 17 N 1.31810 * 121.75346 * 359.44111 * 16 15 14 18 18 H 1.08993 * 109.47275 * 293.95872 * 1 2 3 19 19 H 1.09005 * 109.46857 * 53.95986 * 1 2 3 20 20 H 1.08999 * 109.47118 * 173.95931 * 1 2 3 21 21 H 1.08997 * 109.46957 * 179.97438 * 3 2 1 22 22 H 1.09001 * 109.47398 * 299.99556 * 3 2 1 23 23 H 1.09008 * 109.47411 * 59.99786 * 3 2 1 24 24 H 0.97007 * 119.99303 * 179.97438 * 7 6 4 25 25 H 1.08006 * 120.80341 * 359.97438 * 13 12 2 26 26 H 1.08005 * 120.45013 * 180.02562 * 14 13 12 27 27 H 1.07997 * 119.12453 * 179.71480 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.7021 -1.5520 -1.1324 6 6 1.6371 -0.2860 -2.4812 7 7 0.9288 0.8148 -2.6086 8 14 2.1077 -1.2742 -3.9949 9 1 1.1142 -2.3574 -4.2073 10 1 2.1287 -0.3821 -5.1818 11 1 3.4542 -1.8690 -3.7988 12 6 2.0323 -0.7103 1.2305 13 6 1.9744 -0.0936 2.4705 14 6 2.4475 -0.7859 3.5738 15 7 2.9308 -2.0070 3.4089 16 6 2.9749 -2.5598 2.2135 17 7 2.5341 -1.9315 1.1420 18 1 -0.3633 0.4173 0.9390 19 1 -0.3633 0.6047 -0.8310 20 1 -0.3633 -1.0219 -0.1081 21 1 3.1300 1.4425 0.0005 22 1 1.6767 1.9563 -0.8900 23 1 1.6766 1.9564 0.8900 24 1 0.6509 1.1136 -3.4887 25 1 1.5701 0.9026 2.5744 26 1 2.4179 -0.3370 4.5557 27 1 3.3791 -3.5559 2.1097 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260155528.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = 42.701057 kcal Electronic energy + Delta-G solvation = -11887.535295 eV Core-core repulsion = 9838.546081 eV Total energy + Delta-G solvation = -2048.989214 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.33182 -35.87787 -32.65454 -31.82735 -29.85621 -25.82604 -25.32554 -23.67113 -23.39412 -19.57085 -16.94429 -16.37613 -15.39212 -14.77878 -14.49286 -14.08044 -13.13523 -13.01338 -12.56692 -11.94292 -11.32228 -11.08335 -10.71936 -10.59620 -10.31769 -10.25935 -10.07033 -9.77552 -9.63307 -8.93144 -8.74419 -8.37259 -8.24995 -5.97142 -4.01157 1.58089 1.81943 3.34935 3.40665 3.45675 4.45739 4.51185 4.68516 4.92442 5.24608 5.32526 5.62800 5.88718 6.05667 6.41867 6.60209 6.73531 6.78900 6.84726 7.15173 7.18556 7.44923 7.63335 7.81255 7.89539 8.14106 8.39849 8.86937 9.05347 9.63094 11.06700 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.050696 B = 0.012821 C = 0.011006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.183531 B = 2183.309877 C = 2543.516458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.100 3.900 3 C -0.128 4.128 4 C -0.491 4.491 5 H 0.075 0.925 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.275 1.275 12 C 0.222 3.778 13 C -0.238 4.238 14 C 0.129 3.871 15 N -0.548 5.548 16 C 0.276 3.724 17 N -0.496 5.496 18 H 0.011 0.989 19 H 0.091 0.909 20 H 0.031 0.969 21 H 0.027 0.973 22 H 0.094 0.906 23 H 0.013 0.987 24 H 0.259 0.741 25 H 0.140 0.860 26 H 0.155 0.845 27 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -0.532 7.036 7.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.098 3.902 3 C -0.186 4.186 4 C -0.529 4.529 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.216 1.216 11 H -0.200 1.200 12 C 0.077 3.923 13 C -0.260 4.260 14 C -0.035 4.035 15 N -0.264 5.264 16 C -0.012 4.012 17 N -0.210 5.210 18 H 0.030 0.970 19 H 0.110 0.890 20 H 0.051 0.949 21 H 0.047 0.953 22 H 0.113 0.887 23 H 0.032 0.968 24 H 0.069 0.931 25 H 0.157 0.843 26 H 0.173 0.827 27 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.076 -1.349 6.796 7.011 hybrid contribution -0.091 0.297 -0.649 0.719 sum 0.985 -1.051 6.147 6.314 Atomic orbital electron populations 1.21768 0.95855 1.00605 0.99814 1.17397 0.92866 0.91815 0.88082 1.21893 0.98693 0.97016 1.00972 1.21154 1.28204 1.14686 0.88881 0.90689 1.24919 0.95326 0.94886 0.98885 1.69818 1.38755 1.21582 1.23272 0.86545 0.78977 0.79945 0.82142 1.20724 1.21556 1.20022 1.22710 0.85421 0.88642 0.95561 1.22846 1.04881 1.03250 0.95028 1.22982 0.91599 0.90158 0.98786 1.68284 1.18399 1.12183 1.27505 1.24959 0.93017 0.99661 0.83588 1.68488 1.10323 1.09953 1.32190 0.97022 0.89026 0.94940 0.95348 0.88712 0.96786 0.93097 0.84268 0.82739 0.79905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 8.08 37.16 0.30 -2.55 15 2 C 0.10 2.39 0.61 -156.81 -0.10 2.30 15 3 C -0.13 -2.92 7.91 37.16 0.29 -2.62 15 4 C -0.49 -13.23 7.77 -34.44 -0.27 -13.50 15 5 H 0.07 2.10 6.77 -52.49 -0.36 1.74 15 6 C 0.06 1.60 5.13 -17.82 -0.09 1.51 15 7 N -0.89 -24.12 9.47 55.43 0.52 -23.60 15 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 15 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 12 C 0.22 4.89 5.56 -82.24 -0.46 4.43 15 13 C -0.24 -4.34 9.12 -39.32 -0.36 -4.70 15 14 C 0.13 2.12 11.30 -17.20 -0.19 1.92 15 15 N -0.55 -9.79 10.44 -14.58 -0.15 -9.94 15 16 C 0.28 5.14 12.29 -92.16 -1.13 4.01 15 17 N -0.50 -10.97 8.78 -10.80 -0.09 -11.07 15 18 H 0.01 0.23 8.00 -51.93 -0.42 -0.19 15 19 H 0.09 2.29 6.24 -51.93 -0.32 1.97 15 20 H 0.03 0.77 8.14 -51.93 -0.42 0.34 15 21 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.09 2.36 6.13 -51.93 -0.32 2.05 15 23 H 0.01 0.27 6.79 -51.92 -0.35 -0.09 15 24 H 0.26 6.75 8.31 -40.82 -0.34 6.41 15 25 H 0.14 2.26 6.84 -52.48 -0.36 1.90 15 26 H 0.16 1.90 8.06 -52.48 -0.42 1.47 15 27 H 0.18 2.75 8.06 -52.49 -0.42 2.33 15 LS Contribution 228.80 15.07 3.45 3.45 Total: -1.00 -28.56 228.80 -6.25 -34.81 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -2.95 Total: -0.77 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -2.00 Total: -9.19 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.28 Total: -44.60 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -28.56 -6.25 -34.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260155528.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.509 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds