Wall clock time and date at job start Mon Mar 30 2020 02:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30455 * 125.63964 * 2 1 4 4 C 1.34115 * 109.25710 * 179.89978 * 3 2 1 5 5 C 1.34671 * 107.94460 * 0.37226 * 4 3 2 6 6 N 1.35334 * 125.63918 * 180.02562 * 2 1 3 7 7 C 1.46977 * 142.23041 * 359.69102 * 6 2 1 8 8 C 1.54366 * 105.67315 * 162.97713 * 7 6 2 9 9 C 1.51246 * 143.08961 * 179.85465 * 5 4 3 10 10 H 1.08992 * 110.46506 * 77.55675 * 9 5 4 11 11 C 1.50703 * 110.46714 * 315.09427 * 9 5 4 12 12 H 1.08000 * 119.99440 * 241.45215 * 11 9 5 13 13 C 1.37875 * 120.00122 * 61.45287 * 11 9 5 14 14 N 1.31520 * 120.00102 * 359.97438 * 13 11 9 15 15 Si 1.86807 * 119.99973 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46713 * 59.99961 * 15 13 11 17 17 H 1.48497 * 109.47049 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46752 * 300.00243 * 15 13 11 19 19 H 1.08991 * 109.46879 * 269.97452 * 1 2 3 20 20 H 1.09002 * 109.46879 * 29.97468 * 1 2 3 21 21 H 1.09003 * 109.47120 * 149.97372 * 1 2 3 22 22 H 1.07996 * 126.02867 * 180.35167 * 4 3 2 23 23 H 1.08993 * 110.20645 * 43.92468 * 7 6 2 24 24 H 1.08995 * 110.27590 * 282.06469 * 7 6 2 25 25 H 1.09005 * 110.91832 * 267.72531 * 8 7 6 26 26 H 1.09001 * 110.94912 * 144.10893 * 8 7 6 27 27 H 0.96992 * 119.99827 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2671 1.0602 0.0000 4 6 3.5538 0.6819 0.0022 5 6 3.5906 -0.6643 -0.0047 6 7 2.2956 -1.0999 -0.0005 7 6 2.2409 -2.5686 0.0037 8 6 3.6437 -3.0393 -0.4363 9 6 4.5315 -1.8483 -0.0101 10 1 4.9402 -2.0149 0.9865 11 6 5.6430 -1.6336 -1.0049 12 1 5.7613 -2.3119 -1.8370 13 6 6.5088 -0.5714 -0.8528 14 7 6.3643 0.2548 0.1603 15 14 7.8860 -0.3049 -2.0864 16 1 7.3070 -0.1049 -3.4391 17 1 8.6705 0.8955 -1.7007 18 1 8.7756 -1.4938 -2.0995 19 1 -0.3633 -0.0005 1.0276 20 1 -0.3633 0.8902 -0.5135 21 1 -0.3633 -0.8898 -0.5143 22 1 4.4096 1.3407 0.0081 23 1 1.4876 -2.9193 -0.7016 24 1 2.0177 -2.9354 1.0055 25 1 3.6836 -3.1881 -1.5154 26 1 3.9328 -3.9485 0.0909 27 1 6.9736 1.0018 0.2675 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260258499.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:50 Heat of formation + Delta-G solvation = 61.412368 kcal Electronic energy + Delta-G solvation = -11973.089337 eV Core-core repulsion = 9924.911506 eV Total energy + Delta-G solvation = -2048.177831 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.26791 -35.68372 -32.93365 -30.87281 -29.48385 -27.53272 -25.12914 -23.46218 -20.94392 -19.29429 -18.63494 -16.42336 -15.61689 -14.94845 -14.44559 -13.52150 -13.06294 -12.39551 -12.25908 -12.06124 -11.95057 -11.92737 -11.59534 -11.32438 -10.87048 -10.62014 -10.34820 -9.74892 -9.39968 -8.89193 -8.48995 -8.39073 -6.83111 -6.06815 -4.15053 3.21672 3.31774 3.36737 3.38406 3.74105 4.33873 4.44400 5.16505 5.22657 5.34381 5.46124 5.57635 5.68326 5.93044 6.05822 6.17991 6.33078 6.47368 6.57609 6.96109 7.26603 7.45414 7.65895 7.85395 8.10748 8.21525 8.43130 8.86924 9.26993 9.50791 11.00677 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.050479 B = 0.013337 C = 0.011369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.553109 B = 2098.986366 C = 2462.241211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.166 3.834 3 N -0.499 5.499 4 C -0.017 4.017 5 C 0.042 3.958 6 N -0.497 5.497 7 C 0.111 3.889 8 C -0.127 4.127 9 C 0.103 3.897 10 H 0.049 0.951 11 C -0.518 4.518 12 H 0.061 0.939 13 C 0.069 3.931 14 N -0.875 5.875 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 H 0.065 0.935 20 H 0.078 0.922 21 H 0.059 0.941 22 H 0.176 0.824 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 -4.725 -0.152 8.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 N -0.220 5.220 4 C -0.162 4.162 5 C -0.072 4.072 6 N -0.186 5.186 7 C -0.012 4.012 8 C -0.165 4.165 9 C 0.083 3.917 10 H 0.066 0.934 11 C -0.556 4.556 12 H 0.079 0.921 13 C -0.135 4.135 14 N -0.512 5.512 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.202 1.202 19 H 0.083 0.917 20 H 0.097 0.903 21 H 0.078 0.922 22 H 0.193 0.807 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.405 -3.849 -0.060 8.345 hybrid contribution 1.025 -0.575 -0.642 1.339 sum -6.380 -4.424 -0.702 7.795 Atomic orbital electron populations 1.19909 0.86764 1.02444 1.01938 1.22556 0.94397 0.80865 1.11393 1.70243 1.03197 1.27576 1.20967 1.21867 0.92472 0.92858 1.09027 1.23383 0.83518 0.96830 1.03458 1.46717 1.09265 1.06287 1.56308 1.22164 1.00276 0.77619 1.01114 1.22828 0.92102 0.99850 1.01749 1.17949 0.90797 0.84738 0.98236 0.93351 1.20913 1.11725 1.12276 1.10655 0.92121 1.24980 0.97487 0.95606 0.95420 1.69947 1.37083 1.15188 1.28966 0.86607 0.81846 0.77637 0.81637 1.20247 1.21100 1.20233 0.91668 0.90339 0.92223 0.80666 0.91224 0.91113 0.90834 0.90648 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.80 10.51 36.01 0.38 -0.42 15 2 C 0.17 3.60 8.16 -155.19 -1.27 2.34 15 3 N -0.50 -12.46 11.25 -10.76 -0.12 -12.58 15 4 C -0.02 -0.47 11.04 -17.82 -0.20 -0.67 15 5 C 0.04 1.09 6.28 -81.45 -0.51 0.58 15 6 N -0.50 -10.92 3.61 -108.01 -0.39 -11.31 15 7 C 0.11 1.93 7.77 -3.07 -0.02 1.90 15 8 C -0.13 -2.42 6.65 -25.20 -0.17 -2.59 15 9 C 0.10 2.52 2.86 -91.84 -0.26 2.26 15 10 H 0.05 1.27 8.14 -51.93 -0.42 0.85 15 11 C -0.52 -13.84 8.54 -34.44 -0.29 -14.13 15 12 H 0.06 1.58 7.64 -52.49 -0.40 1.17 15 13 C 0.07 1.86 5.29 -17.82 -0.09 1.76 15 14 N -0.88 -24.46 10.38 55.43 0.58 -23.88 15 15 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 15 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 19 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 20 H 0.08 1.14 8.14 -51.93 -0.42 0.71 15 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.18 4.94 6.41 -52.49 -0.34 4.60 15 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.07 1.40 7.81 -51.93 -0.41 0.99 15 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 LS Contribution 230.36 15.07 3.47 3.47 Total: -1.00 -30.52 230.36 -7.16 -37.69 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.24 Total: -0.34 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.44 Total: -8.97 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.06 Total: -47.77 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.52 -7.16 -37.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260258499.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.098 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds