Wall clock time and date at job start Mon Mar 30 2020 02:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30455 * 125.63964 * 2 1 4 4 C 1.34115 * 109.25710 * 179.89978 * 3 2 1 5 5 C 1.34671 * 107.94460 * 0.37226 * 4 3 2 6 6 N 1.35334 * 125.63918 * 180.02562 * 2 1 3 7 7 C 1.46977 * 142.23041 * 359.69102 * 6 2 1 8 8 C 1.54366 * 105.67315 * 162.97713 * 7 6 2 9 9 C 1.51246 * 143.08961 * 179.85465 * 5 4 3 10 10 H 1.08992 * 110.46506 * 77.55675 * 9 5 4 11 11 C 1.50703 * 110.46714 * 315.09427 * 9 5 4 12 12 H 1.08000 * 119.99440 * 241.45215 * 11 9 5 13 13 C 1.37875 * 120.00122 * 61.45287 * 11 9 5 14 14 N 1.31520 * 120.00102 * 359.97438 * 13 11 9 15 15 Si 1.86807 * 119.99973 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46713 * 59.99961 * 15 13 11 17 17 H 1.48497 * 109.47049 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46752 * 300.00243 * 15 13 11 19 19 H 1.08991 * 109.46879 * 269.97452 * 1 2 3 20 20 H 1.09002 * 109.46879 * 29.97468 * 1 2 3 21 21 H 1.09003 * 109.47120 * 149.97372 * 1 2 3 22 22 H 1.07996 * 126.02867 * 180.35167 * 4 3 2 23 23 H 1.08993 * 110.20645 * 43.92468 * 7 6 2 24 24 H 1.08995 * 110.27590 * 282.06469 * 7 6 2 25 25 H 1.09005 * 110.91832 * 267.72531 * 8 7 6 26 26 H 1.09001 * 110.94912 * 144.10893 * 8 7 6 27 27 H 0.96992 * 119.99827 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2671 1.0602 0.0000 4 6 3.5538 0.6819 0.0022 5 6 3.5906 -0.6643 -0.0047 6 7 2.2956 -1.0999 -0.0005 7 6 2.2409 -2.5686 0.0037 8 6 3.6437 -3.0393 -0.4363 9 6 4.5315 -1.8483 -0.0101 10 1 4.9402 -2.0149 0.9865 11 6 5.6430 -1.6336 -1.0049 12 1 5.7613 -2.3119 -1.8370 13 6 6.5088 -0.5714 -0.8528 14 7 6.3643 0.2548 0.1603 15 14 7.8860 -0.3049 -2.0864 16 1 7.3070 -0.1049 -3.4391 17 1 8.6705 0.8955 -1.7007 18 1 8.7756 -1.4938 -2.0995 19 1 -0.3633 -0.0005 1.0276 20 1 -0.3633 0.8902 -0.5135 21 1 -0.3633 -0.8898 -0.5143 22 1 4.4096 1.3407 0.0081 23 1 1.4876 -2.9193 -0.7016 24 1 2.0177 -2.9354 1.0055 25 1 3.6836 -3.1881 -1.5154 26 1 3.9328 -3.9485 0.0909 27 1 6.9736 1.0018 0.2675 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260258499.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:50 Heat of formation + Delta-G solvation = 42.472882 kcal Electronic energy + Delta-G solvation = -11973.910614 eV Core-core repulsion = 9924.911506 eV Total energy + Delta-G solvation = -2048.999109 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.01983 -37.38397 -34.87834 -32.50660 -31.14622 -29.21899 -26.92126 -25.23665 -22.64069 -21.13974 -20.27435 -18.38729 -17.26681 -16.68914 -16.30596 -15.05285 -14.72650 -14.10261 -13.95194 -13.72267 -13.61050 -13.32152 -13.12879 -12.95975 -12.70831 -12.44020 -12.01864 -11.63485 -11.27036 -10.73366 -10.51107 -10.10759 -8.71200 -8.11637 -6.25918 1.41600 1.44945 1.49832 1.52497 2.18283 2.40491 2.49819 3.18641 3.67157 3.85061 4.10782 4.17249 4.43036 4.61290 4.70487 4.78206 4.89047 4.93073 5.05595 5.25472 5.46061 5.56805 5.75416 5.81968 6.14749 6.22086 6.72795 6.88729 7.41967 7.45124 8.94812 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.050479 B = 0.013337 C = 0.011369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.553109 B = 2098.986366 C = 2462.241211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C 0.181 3.819 3 N -0.535 5.535 4 C -0.052 4.052 5 C 0.017 3.983 6 N -0.497 5.497 7 C 0.108 3.892 8 C -0.117 4.117 9 C 0.091 3.909 10 H 0.020 0.980 11 C -0.534 4.534 12 H 0.064 0.936 13 C 0.019 3.981 14 N -0.902 5.902 15 Si 0.955 3.045 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.264 1.264 19 H 0.088 0.912 20 H 0.087 0.913 21 H 0.091 0.909 22 H 0.147 0.853 23 H 0.110 0.890 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.818 -6.483 -0.761 10.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.079 4.079 3 N -0.257 5.257 4 C -0.196 4.196 5 C -0.099 4.099 6 N -0.184 5.184 7 C -0.012 4.012 8 C -0.155 4.155 9 C 0.071 3.929 10 H 0.038 0.962 11 C -0.572 4.572 12 H 0.082 0.918 13 C -0.182 4.182 14 N -0.539 5.539 15 Si 0.781 3.219 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.189 1.189 19 H 0.107 0.893 20 H 0.106 0.894 21 H 0.110 0.890 22 H 0.165 0.835 23 H 0.128 0.872 24 H 0.116 0.884 25 H 0.091 0.909 26 H 0.123 0.877 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.232 -5.644 -0.670 10.842 hybrid contribution 1.528 -0.033 -0.423 1.586 sum -7.704 -5.677 -1.093 9.632 Atomic orbital electron populations 1.20177 0.81978 1.04527 1.04079 1.23739 0.96769 0.79974 1.07378 1.70179 1.02655 1.29625 1.23242 1.21636 0.92950 0.93612 1.11437 1.23334 0.85682 0.96565 1.04324 1.46982 1.07721 1.08256 1.55480 1.22508 1.00113 0.74676 1.03882 1.22764 0.91956 0.98672 1.02089 1.17962 0.91373 0.87162 0.96391 0.96224 1.21315 1.12567 1.12229 1.11135 0.91805 1.25760 0.99824 0.95575 0.97024 1.70093 1.37767 1.15505 1.30582 0.85658 0.79299 0.77737 0.79216 1.20312 1.21220 1.18917 0.89348 0.89371 0.89031 0.83533 0.87229 0.88371 0.90861 0.87651 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.32 10.51 71.24 0.75 -0.57 15 2 C 0.18 7.51 8.16 138.05 1.13 8.64 15 3 N -0.54 -26.96 11.25 -187.96 -2.11 -29.08 15 4 C -0.05 -2.92 11.04 83.53 0.92 -1.99 15 5 C 0.02 0.86 6.28 41.17 0.26 1.12 15 6 N -0.50 -20.79 3.61 -495.62 -1.79 -22.58 15 7 C 0.11 3.33 7.77 86.75 0.67 4.00 15 8 C -0.12 -4.15 6.65 31.58 0.21 -3.94 15 9 C 0.09 4.50 2.86 -11.59 -0.03 4.47 15 10 H 0.02 1.07 8.14 -2.39 -0.02 1.05 15 11 C -0.53 -28.91 8.54 25.60 0.22 -28.69 15 12 H 0.06 3.31 7.64 -2.91 -0.02 3.28 15 13 C 0.02 1.05 5.29 84.65 0.45 1.49 15 14 N -0.90 -52.58 10.38 21.45 0.22 -52.36 15 15 Si 0.96 43.75 29.54 68.60 2.03 45.77 15 16 H -0.28 -12.63 7.11 99.48 0.71 -11.93 15 17 H -0.29 -13.04 7.11 99.48 0.71 -12.34 15 18 H -0.26 -11.48 7.11 99.48 0.71 -10.77 15 19 H 0.09 2.03 8.14 -2.39 -0.02 2.01 15 20 H 0.09 2.22 8.14 -2.39 -0.02 2.20 15 21 H 0.09 1.90 8.14 -2.39 -0.02 1.88 15 22 H 0.15 8.85 6.41 -2.91 -0.02 8.83 15 23 H 0.11 2.56 8.14 -2.39 -0.02 2.54 15 24 H 0.10 2.53 8.14 -2.39 -0.02 2.51 15 25 H 0.07 2.59 7.81 -2.38 -0.02 2.57 15 26 H 0.11 3.06 8.14 -2.39 -0.02 3.05 15 27 H 0.26 14.64 8.31 -92.71 -0.77 13.87 15 Total: -1.00 -69.02 230.36 4.07 -64.95 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.15 Total: 8.76 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 4.57 Total: -15.47 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -3.68 Total: -104.01 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -69.02 4.07 -64.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260258499.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.422 kcal (2) G-P(sol) polarization free energy of solvation -69.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds