Wall clock time and date at job start Mon Mar 30 2020 01:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99641 * 2 1 4 4 H 1.48500 * 109.47379 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46963 * 299.99943 * 3 2 1 6 6 H 1.48499 * 109.47183 * 59.99686 * 3 2 1 7 7 C 1.37869 * 120.00399 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00295 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00156 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47037 * 180.02562 * 9 7 2 11 11 C 1.35044 * 126.39640 * 265.11334 * 10 9 7 12 12 N 1.30502 * 108.70116 * 180.27106 * 11 10 9 13 13 C 1.34127 * 109.25447 * 359.77074 * 12 11 10 14 14 C 1.34674 * 108.02075 * 359.97438 * 13 12 11 15 15 C 1.50701 * 126.59089 * 179.97438 * 14 13 12 16 16 C 1.53001 * 117.51956 * 326.31437 * 15 14 13 17 17 C 1.52999 * 60.00190 * 107.47765 * 16 15 14 18 18 H 0.96993 * 120.00560 * 0.02562 * 1 2 3 19 19 H 1.08992 * 109.47438 * 59.99934 * 9 7 2 20 20 H 1.09001 * 109.46915 * 299.99917 * 9 7 2 21 21 H 1.07998 * 125.64986 * 0.02562 * 11 10 9 22 22 H 1.08000 * 125.98893 * 180.02562 * 13 12 11 23 23 H 1.09002 * 115.55088 * 180.61046 * 15 14 13 24 24 H 1.09001 * 117.49733 * 214.97195 * 16 15 14 25 25 H 1.08995 * 117.49577 * 359.97438 * 16 15 14 26 26 H 1.09004 * 117.50150 * 252.51496 * 17 16 15 27 27 H 1.09004 * 117.49681 * 107.48417 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6125 0.0018 11 6 2.6546 -4.2822 -1.0806 12 7 3.4835 -5.2087 -0.6839 13 6 3.5939 -5.1609 0.6520 14 6 2.8037 -4.1666 1.1000 15 6 2.6119 -3.7489 2.5352 16 6 2.6677 -4.8430 3.6033 17 6 3.8214 -3.8473 3.4672 18 1 -0.4850 0.8399 -0.0004 19 1 0.6249 -2.5571 -0.8896 20 1 0.6242 -2.5567 0.8903 21 1 2.3728 -4.0863 -2.1046 22 1 4.2093 -5.8061 1.2615 23 1 1.9185 -2.9235 2.6960 24 1 2.0108 -4.7373 4.4668 25 1 2.8427 -5.8652 3.2680 26 1 4.7556 -4.2145 3.0423 27 1 3.9235 -3.0865 4.2412 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260262697.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:03 Heat of formation + Delta-G solvation = 72.971809 kcal Electronic energy + Delta-G solvation = -11593.934445 eV Core-core repulsion = 9546.257869 eV Total energy + Delta-G solvation = -2047.676576 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.23131 -36.61998 -34.01792 -32.00234 -28.52643 -27.19156 -23.33360 -22.65936 -22.05407 -20.41367 -18.62418 -16.82855 -16.29125 -15.05128 -14.59102 -14.17396 -13.76144 -13.11294 -12.80882 -12.40694 -11.86419 -11.38608 -11.26694 -11.07112 -10.89200 -10.43376 -10.37329 -10.12826 -9.94963 -9.22521 -8.72440 -8.47502 -7.44491 -6.35012 -4.42823 2.82577 3.14793 3.23297 3.29114 3.83449 3.90695 4.24128 4.42142 5.00240 5.07523 5.28481 5.42823 5.47340 5.79263 5.88876 6.00598 6.13207 6.19463 6.39634 6.47460 6.78478 6.91531 7.42223 7.57008 7.61235 7.79596 8.14727 8.65517 8.87832 9.25357 10.73385 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.036550 B = 0.011900 C = 0.010297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.882698 B = 2352.454202 C = 2718.516440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.230 3.770 10 N -0.421 5.421 11 C 0.171 3.829 12 N -0.514 5.514 13 C -0.052 4.052 14 C 0.015 3.985 15 C -0.072 4.072 16 C -0.174 4.174 17 C -0.168 4.168 18 H 0.268 0.732 19 H 0.051 0.949 20 H 0.047 0.953 21 H 0.195 0.805 22 H 0.154 0.846 23 H 0.116 0.884 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -4.744 4.543 7.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.084 0.916 9 C 0.111 3.889 10 N -0.098 5.098 11 C -0.112 4.112 12 N -0.233 5.233 13 C -0.202 4.202 14 C -0.104 4.104 15 C -0.091 4.091 16 C -0.211 4.211 17 C -0.206 4.206 18 H 0.078 0.922 19 H 0.069 0.931 20 H 0.065 0.935 21 H 0.212 0.788 22 H 0.171 0.829 23 H 0.134 0.866 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.203 -5.024 3.984 7.167 hybrid contribution -0.112 1.645 0.425 1.702 sum 3.091 -3.379 4.409 6.357 Atomic orbital electron populations 1.69924 1.06090 1.27675 1.49101 1.24944 0.94951 0.99584 0.94281 0.86310 0.80111 0.82469 0.77907 1.19484 1.20576 1.20605 1.21331 0.93774 0.89607 1.53041 0.91590 1.19772 0.87239 0.82118 0.99768 1.45880 1.32589 1.25852 1.05519 1.24618 0.98892 0.93717 0.93934 1.70144 1.19135 1.22358 1.11679 1.21699 1.05181 1.01732 0.91561 1.20179 1.02091 0.99388 0.88719 1.20126 1.02113 1.00957 0.85922 1.23015 1.02093 0.95583 1.00428 1.22973 0.93356 1.02193 1.02053 0.92245 0.93148 0.93492 0.78809 0.82872 0.86600 0.88806 0.88699 0.88672 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.49 13.29 55.43 0.74 -23.76 15 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 15 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.54 -14.35 9.39 -34.44 -0.32 -14.68 15 8 H 0.07 1.82 7.81 -52.48 -0.41 1.41 15 9 C 0.23 5.63 5.61 -5.19 -0.03 5.61 15 10 N -0.42 -9.44 2.73 -115.27 -0.32 -9.75 15 11 C 0.17 3.62 12.56 -90.37 -1.13 2.48 15 12 N -0.51 -11.05 11.25 -14.66 -0.16 -11.21 15 13 C -0.05 -1.04 10.94 -17.81 -0.19 -1.24 15 14 C 0.02 0.31 6.63 -81.60 -0.54 -0.23 15 15 C -0.07 -1.29 6.04 -91.77 -0.55 -1.84 15 16 C -0.17 -2.43 10.05 -26.73 -0.27 -2.70 15 17 C -0.17 -2.45 10.06 -26.73 -0.27 -2.72 15 18 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 19 H 0.05 1.26 8.13 -51.93 -0.42 0.83 15 20 H 0.05 1.19 7.60 -51.93 -0.39 0.80 15 21 H 0.20 3.51 8.06 -52.49 -0.42 3.09 15 22 H 0.15 2.61 8.06 -52.49 -0.42 2.19 15 23 H 0.12 2.26 7.53 -51.93 -0.39 1.87 15 24 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 25 H 0.09 1.27 7.95 -51.93 -0.41 0.85 15 26 H 0.09 1.35 7.98 -51.93 -0.41 0.94 15 27 H 0.09 1.25 8.14 -51.93 -0.42 0.82 15 LS Contribution 242.57 15.07 3.66 3.66 Total: -1.00 -28.77 242.57 -7.79 -36.56 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -3.27 Total: 2.55 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -3.41 Total: -13.66 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.26 Total: -44.72 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.77 -7.79 -36.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260262697.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.536 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds