Wall clock time and date at job start Mon Mar 30 2020 01:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99641 * 2 1 4 4 H 1.48500 * 109.47379 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46963 * 299.99943 * 3 2 1 6 6 H 1.48499 * 109.47183 * 59.99686 * 3 2 1 7 7 C 1.37869 * 120.00399 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00295 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00156 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47037 * 180.02562 * 9 7 2 11 11 C 1.35044 * 126.39640 * 265.11334 * 10 9 7 12 12 N 1.30502 * 108.70116 * 180.27106 * 11 10 9 13 13 C 1.34127 * 109.25447 * 359.77074 * 12 11 10 14 14 C 1.34674 * 108.02075 * 359.97438 * 13 12 11 15 15 C 1.50701 * 126.59089 * 179.97438 * 14 13 12 16 16 C 1.53001 * 117.51956 * 326.31437 * 15 14 13 17 17 C 1.52999 * 60.00190 * 107.47765 * 16 15 14 18 18 H 0.96993 * 120.00560 * 0.02562 * 1 2 3 19 19 H 1.08992 * 109.47438 * 59.99934 * 9 7 2 20 20 H 1.09001 * 109.46915 * 299.99917 * 9 7 2 21 21 H 1.07998 * 125.64986 * 0.02562 * 11 10 9 22 22 H 1.08000 * 125.98893 * 180.02562 * 13 12 11 23 23 H 1.09002 * 115.55088 * 180.61046 * 15 14 13 24 24 H 1.09001 * 117.49733 * 214.97195 * 16 15 14 25 25 H 1.08995 * 117.49577 * 359.97438 * 16 15 14 26 26 H 1.09004 * 117.50150 * 252.51496 * 17 16 15 27 27 H 1.09004 * 117.49681 * 107.48417 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6125 0.0018 11 6 2.6546 -4.2822 -1.0806 12 7 3.4835 -5.2087 -0.6839 13 6 3.5939 -5.1609 0.6520 14 6 2.8037 -4.1666 1.1000 15 6 2.6119 -3.7489 2.5352 16 6 2.6677 -4.8430 3.6033 17 6 3.8214 -3.8473 3.4672 18 1 -0.4850 0.8399 -0.0004 19 1 0.6249 -2.5571 -0.8896 20 1 0.6242 -2.5567 0.8903 21 1 2.3728 -4.0863 -2.1046 22 1 4.2093 -5.8061 1.2615 23 1 1.9185 -2.9235 2.6960 24 1 2.0108 -4.7373 4.4668 25 1 2.8427 -5.8652 3.2680 26 1 4.7556 -4.2145 3.0423 27 1 3.9235 -3.0865 4.2412 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260262697.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:02 Heat of formation + Delta-G solvation = 58.152360 kcal Electronic energy + Delta-G solvation = -11594.577064 eV Core-core repulsion = 9546.257869 eV Total energy + Delta-G solvation = -2048.319195 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.85988 -37.88560 -35.94302 -33.89598 -30.10438 -29.11476 -25.25967 -24.12778 -23.17558 -22.04703 -20.20526 -18.84447 -17.98194 -16.49456 -16.36591 -15.89753 -15.12064 -14.73970 -14.37124 -14.30359 -13.70056 -13.13241 -12.83096 -12.63298 -12.34173 -12.29083 -11.88537 -11.74857 -11.36222 -10.91218 -10.73503 -10.25167 -8.98949 -8.38945 -6.54672 1.23983 1.35086 1.38312 1.50077 2.18404 2.25750 2.36207 2.93903 3.15937 3.69190 3.94300 4.00931 4.26097 4.35360 4.46543 4.50564 4.80609 4.87054 4.88495 5.03563 5.27356 5.31069 5.50902 5.76273 5.80329 5.96129 6.36630 6.63183 7.17263 7.24584 8.69621 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.036550 B = 0.011900 C = 0.010297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.882698 B = 2352.454202 C = 2718.516440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.552 4.552 8 H 0.051 0.949 9 C 0.247 3.753 10 N -0.437 5.437 11 C 0.157 3.843 12 N -0.526 5.526 13 C -0.056 4.056 14 C 0.005 3.995 15 C -0.114 4.114 16 C -0.145 4.145 17 C -0.153 4.153 18 H 0.273 0.727 19 H 0.040 0.960 20 H 0.031 0.969 21 H 0.215 0.785 22 H 0.184 0.816 23 H 0.089 0.911 24 H 0.114 0.886 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 -4.802 5.475 8.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.590 4.590 8 H 0.069 0.931 9 C 0.127 3.873 10 N -0.116 5.116 11 C -0.125 4.125 12 N -0.245 5.245 13 C -0.205 4.205 14 C -0.112 4.112 15 C -0.134 4.134 16 C -0.182 4.182 17 C -0.190 4.190 18 H 0.082 0.918 19 H 0.058 0.942 20 H 0.049 0.951 21 H 0.232 0.768 22 H 0.201 0.799 23 H 0.108 0.892 24 H 0.132 0.868 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.177 -5.107 4.922 8.232 hybrid contribution -0.414 1.611 0.161 1.672 sum 3.763 -3.496 5.083 7.226 Atomic orbital electron populations 1.70002 1.07324 1.28820 1.49451 1.25719 0.95740 1.02712 0.93605 0.85329 0.78508 0.78435 0.78381 1.19720 1.19693 1.19675 1.21428 0.93129 0.90930 1.53559 0.93067 1.19353 0.87233 0.82396 0.98331 1.45860 1.33076 1.25926 1.06729 1.25126 0.98974 0.93667 0.94702 1.70166 1.19283 1.22450 1.12603 1.22155 1.05202 1.01844 0.91271 1.20762 1.01656 0.99259 0.89548 1.20157 1.04706 1.02834 0.85688 1.23129 1.01296 0.95063 0.98688 1.23094 0.92796 1.02535 1.00583 0.91757 0.94199 0.95119 0.76849 0.79906 0.89232 0.86781 0.87577 0.87996 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.76 13.29 21.44 0.28 -50.47 15 2 C 0.02 1.25 5.46 84.65 0.46 1.71 15 3 Si 0.97 42.08 29.54 68.60 2.03 44.11 15 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 7 C -0.55 -29.87 9.39 25.60 0.24 -29.63 15 8 H 0.05 2.87 7.81 -2.91 -0.02 2.85 15 9 C 0.25 12.45 5.61 85.63 0.48 12.93 15 10 N -0.44 -19.86 2.73 -518.61 -1.42 -21.28 15 11 C 0.16 6.64 12.56 180.26 2.26 8.90 15 12 N -0.53 -22.14 11.25 -200.31 -2.25 -24.40 15 13 C -0.06 -2.18 10.94 83.52 0.91 -1.26 15 14 C 0.01 0.22 6.63 40.95 0.27 0.49 15 15 C -0.11 -4.03 6.04 -11.54 -0.07 -4.10 15 16 C -0.14 -3.65 10.05 30.59 0.31 -3.34 15 17 C -0.15 -4.08 10.06 30.60 0.31 -3.78 15 18 H 0.27 14.11 8.31 -92.71 -0.77 13.34 15 19 H 0.04 2.06 8.13 -2.39 -0.02 2.04 15 20 H 0.03 1.62 7.60 -2.39 -0.02 1.61 15 21 H 0.22 7.74 8.06 -2.91 -0.02 7.71 15 22 H 0.18 5.74 8.06 -2.91 -0.02 5.71 15 23 H 0.09 3.60 7.53 -2.39 -0.02 3.58 15 24 H 0.11 2.43 8.14 -2.39 -0.02 2.41 15 25 H 0.11 2.47 7.95 -2.39 -0.02 2.45 15 26 H 0.10 2.60 7.98 -2.39 -0.02 2.58 15 27 H 0.11 2.59 8.14 -2.38 -0.02 2.57 15 Total: -1.00 -60.70 242.57 4.96 -55.73 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.15 Total: 14.38 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 5.18 Total: -18.07 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -3.39 Total: -96.15 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -60.70 4.96 -55.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260262697.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.887 kcal (2) G-P(sol) polarization free energy of solvation -60.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds