Wall clock time and date at job start Mon Mar 30 2020 02:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38615 * 120.44443 * 2 1 4 4 C 1.38588 * 118.39716 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.44277 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46778 * 205.00175 * 5 4 3 7 7 C 1.52995 * 109.47621 * 325.00244 * 5 4 3 8 8 C 1.50698 * 109.46880 * 85.00650 * 5 4 3 9 9 H 1.08002 * 120.00245 * 0.02562 * 8 5 4 10 10 C 1.37885 * 119.99980 * 179.97438 * 8 5 4 11 11 N 1.31507 * 119.99928 * 359.97438 * 10 8 5 12 12 Si 1.86796 * 119.99996 * 180.02562 * 10 8 5 13 13 H 1.48495 * 109.47443 * 59.99956 * 12 10 8 14 14 H 1.48497 * 109.47094 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47138 * 300.00046 * 12 10 8 16 16 N 1.32340 * 119.10366 * 359.73887 * 4 3 2 17 17 C 1.31785 * 120.82143 * 0.53892 * 16 4 3 18 18 N 1.31809 * 121.75194 * 359.44192 * 17 16 4 19 19 H 1.09002 * 109.46862 * 270.01964 * 1 2 3 20 20 H 1.08992 * 109.47344 * 30.02064 * 1 2 3 21 21 H 1.08996 * 109.46840 * 150.02074 * 1 2 3 22 22 H 1.08001 * 120.80338 * 0.02562 * 3 2 1 23 23 H 1.08998 * 109.47069 * 180.02562 * 7 5 4 24 24 H 1.08998 * 109.47636 * 300.00191 * 7 5 4 25 25 H 1.09005 * 109.46723 * 60.00444 * 7 5 4 26 26 H 0.96997 * 120.00234 * 179.97438 * 11 10 8 27 27 H 1.08002 * 119.12753 * 179.72440 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2094 1.1950 0.0000 4 6 3.5944 1.1455 0.0005 5 6 4.4039 2.4166 0.0012 6 1 5.3848 2.2229 -0.4328 7 6 3.6816 3.4818 -0.8262 8 6 4.5688 2.9064 1.4167 9 1 4.1316 2.3524 2.2343 10 6 5.2788 4.0613 1.6684 11 7 5.8125 4.7351 0.6731 12 14 5.4839 4.6680 3.4231 13 1 6.1849 3.6339 4.2258 14 1 6.2814 5.9206 3.4238 15 1 4.1476 4.9322 4.0149 16 7 4.1964 -0.0330 0.0063 17 6 3.4957 -1.1491 0.0008 18 7 2.1776 -1.1407 0.0004 19 1 -0.3633 0.0004 1.0277 20 1 -0.3633 0.8897 -0.5141 21 1 -0.3633 -0.8901 -0.5135 22 1 1.6899 2.1419 0.0004 23 1 4.2674 4.4010 -0.8261 24 1 3.5623 3.1276 -1.8501 25 1 2.7007 3.6756 -0.3921 26 1 6.3117 5.5477 0.8500 27 1 4.0152 -2.0960 0.0013 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260408650.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:29 Heat of formation + Delta-G solvation = 30.164400 kcal Electronic energy + Delta-G solvation = -11571.831958 eV Core-core repulsion = 9522.299113 eV Total energy + Delta-G solvation = -2049.532845 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.35920 -35.11579 -33.50378 -32.03574 -29.72852 -27.65143 -25.35670 -23.94986 -22.40932 -19.87733 -16.84089 -16.44424 -15.62348 -14.77492 -14.56454 -14.40953 -12.99636 -12.95057 -12.64385 -12.41073 -12.09239 -11.56347 -10.99301 -10.90554 -10.61835 -10.43744 -10.05071 -9.93215 -9.75716 -9.12870 -8.60810 -8.52914 -8.37500 -6.10314 -4.17858 1.60178 1.82128 3.27905 3.32192 3.35638 4.31899 4.51024 4.54124 4.87206 5.10686 5.22383 5.53196 5.70545 5.78092 5.93125 6.06593 6.17356 6.51519 6.72976 6.83937 7.01282 7.23863 7.52311 7.64295 7.89001 7.97081 8.21840 8.81802 8.84059 9.46341 10.95841 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.048058 B = 0.010325 C = 0.010288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.490020 B = 2711.195726 C = 2720.935102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.154 3.846 3 C -0.225 4.225 4 C 0.223 3.777 5 C 0.081 3.919 6 H 0.052 0.948 7 C -0.136 4.136 8 C -0.507 4.507 9 H 0.054 0.946 10 C 0.066 3.934 11 N -0.887 5.887 12 Si 0.899 3.101 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.276 1.276 16 N -0.527 5.527 17 C 0.284 3.716 18 N -0.549 5.549 19 H 0.078 0.922 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.143 0.857 23 H 0.092 0.908 24 H 0.011 0.989 25 H 0.033 0.967 26 H 0.264 0.736 27 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.386 -5.011 -1.474 9.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.010 3.990 3 C -0.247 4.247 4 C 0.078 3.922 5 C 0.061 3.939 6 H 0.070 0.930 7 C -0.194 4.194 8 C -0.546 4.546 9 H 0.072 0.928 10 C -0.136 4.136 11 N -0.525 5.525 12 Si 0.726 3.274 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.202 1.202 16 N -0.242 5.242 17 C -0.005 4.005 18 N -0.265 5.265 19 H 0.096 0.904 20 H 0.094 0.906 21 H 0.093 0.907 22 H 0.161 0.839 23 H 0.111 0.889 24 H 0.030 0.970 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.807 -5.703 -1.511 9.008 hybrid contribution -0.226 1.050 1.011 1.475 sum -7.033 -4.653 -0.501 8.448 Atomic orbital electron populations 1.20679 0.88811 1.03205 1.03020 1.21590 0.97003 0.88780 0.91654 1.22671 0.96567 0.99828 1.05661 1.22743 0.91630 0.94728 0.83049 1.17928 0.94044 0.84561 0.97320 0.92973 1.21867 0.99719 1.02673 0.95122 1.20796 1.34538 1.08622 0.90637 0.92788 1.24902 0.94975 0.96322 0.97407 1.69858 1.34861 1.17102 1.30671 0.86543 0.78277 0.78110 0.84454 1.20147 1.21051 1.20180 1.68364 1.41982 0.98873 1.14982 1.24791 0.86788 0.97093 0.91836 1.68119 1.10591 1.30446 1.17370 0.90364 0.90585 0.90674 0.83890 0.88933 0.96967 0.94823 0.92614 0.79848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.22 36.01 0.37 -0.90 15 2 C 0.15 2.73 6.82 -82.24 -0.56 2.17 15 3 C -0.23 -4.45 8.94 -39.31 -0.35 -4.81 15 4 C 0.22 5.09 5.76 -82.24 -0.47 4.62 15 5 C 0.08 2.04 2.65 -92.93 -0.25 1.80 15 6 H 0.05 1.45 8.14 -51.93 -0.42 1.03 15 7 C -0.14 -3.15 8.42 37.16 0.31 -2.84 15 8 C -0.51 -13.90 8.55 -34.44 -0.29 -14.19 15 9 H 0.05 1.50 7.74 -52.49 -0.41 1.10 15 10 C 0.07 1.80 5.30 -17.82 -0.09 1.70 15 11 N -0.89 -24.69 11.32 55.43 0.63 -24.06 15 12 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 15 13 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 14 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 16 N -0.53 -11.72 10.38 -10.80 -0.11 -11.83 15 17 C 0.28 5.34 12.29 -92.15 -1.13 4.21 15 18 N -0.55 -10.15 10.38 -10.79 -0.11 -10.26 15 19 H 0.08 0.91 8.14 -51.93 -0.42 0.48 15 20 H 0.08 0.83 8.10 -51.93 -0.42 0.41 15 21 H 0.07 0.88 8.14 -51.93 -0.42 0.45 15 22 H 0.14 2.62 6.44 -52.49 -0.34 2.28 15 23 H 0.09 2.35 6.07 -51.93 -0.32 2.04 15 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 25 H 0.03 0.72 6.58 -51.93 -0.34 0.38 15 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 15 27 H 0.18 2.72 8.06 -52.49 -0.42 2.30 15 LS Contribution 235.74 15.07 3.55 3.55 Total: -1.00 -29.48 235.74 -6.61 -36.09 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -3.07 Total: -1.30 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -2.47 Total: -8.25 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.40 Total: -46.15 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.48 -6.61 -36.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260408650.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.254 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds