Wall clock time and date at job start Mon Mar 30 2020 02:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38615 * 120.44443 * 2 1 4 4 C 1.38588 * 118.39716 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.44277 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46778 * 205.00175 * 5 4 3 7 7 C 1.52995 * 109.47621 * 325.00244 * 5 4 3 8 8 C 1.50698 * 109.46880 * 85.00650 * 5 4 3 9 9 H 1.08002 * 120.00245 * 0.02562 * 8 5 4 10 10 C 1.37885 * 119.99980 * 179.97438 * 8 5 4 11 11 N 1.31507 * 119.99928 * 359.97438 * 10 8 5 12 12 Si 1.86796 * 119.99996 * 180.02562 * 10 8 5 13 13 H 1.48495 * 109.47443 * 59.99956 * 12 10 8 14 14 H 1.48497 * 109.47094 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47138 * 300.00046 * 12 10 8 16 16 N 1.32340 * 119.10366 * 359.73887 * 4 3 2 17 17 C 1.31785 * 120.82143 * 0.53892 * 16 4 3 18 18 N 1.31809 * 121.75194 * 359.44192 * 17 16 4 19 19 H 1.09002 * 109.46862 * 270.01964 * 1 2 3 20 20 H 1.08992 * 109.47344 * 30.02064 * 1 2 3 21 21 H 1.08996 * 109.46840 * 150.02074 * 1 2 3 22 22 H 1.08001 * 120.80338 * 0.02562 * 3 2 1 23 23 H 1.08998 * 109.47069 * 180.02562 * 7 5 4 24 24 H 1.08998 * 109.47636 * 300.00191 * 7 5 4 25 25 H 1.09005 * 109.46723 * 60.00444 * 7 5 4 26 26 H 0.96997 * 120.00234 * 179.97438 * 11 10 8 27 27 H 1.08002 * 119.12753 * 179.72440 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2094 1.1950 0.0000 4 6 3.5944 1.1455 0.0005 5 6 4.4039 2.4166 0.0012 6 1 5.3848 2.2229 -0.4328 7 6 3.6816 3.4818 -0.8262 8 6 4.5688 2.9064 1.4167 9 1 4.1316 2.3524 2.2343 10 6 5.2788 4.0613 1.6684 11 7 5.8125 4.7351 0.6731 12 14 5.4839 4.6680 3.4231 13 1 6.1849 3.6339 4.2258 14 1 6.2814 5.9206 3.4238 15 1 4.1476 4.9322 4.0149 16 7 4.1964 -0.0330 0.0063 17 6 3.4957 -1.1491 0.0008 18 7 2.1776 -1.1407 0.0004 19 1 -0.3633 0.0004 1.0277 20 1 -0.3633 0.8897 -0.5141 21 1 -0.3633 -0.8901 -0.5135 22 1 1.6899 2.1419 0.0004 23 1 4.2674 4.4010 -0.8261 24 1 3.5623 3.1276 -1.8501 25 1 2.7007 3.6756 -0.3921 26 1 6.3117 5.5477 0.8500 27 1 4.0152 -2.0960 0.0013 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260408650.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:29 Heat of formation + Delta-G solvation = 12.594372 kcal Electronic energy + Delta-G solvation = -11572.593851 eV Core-core repulsion = 9522.299113 eV Total energy + Delta-G solvation = -2050.294738 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.88216 -36.93036 -35.03177 -33.83929 -31.43142 -28.98301 -27.36119 -25.60783 -23.96526 -21.61200 -18.53563 -18.31961 -17.26006 -16.43803 -16.24072 -15.87432 -14.78123 -14.61681 -13.95259 -13.73847 -13.49388 -13.18171 -12.84961 -12.80374 -12.44355 -12.28189 -11.89650 -11.64432 -11.44539 -10.86923 -10.54695 -10.21802 -10.01702 -8.16952 -6.32537 0.12582 0.25212 1.41195 1.42592 1.50716 2.39183 2.95503 3.10212 3.24725 3.38501 3.70215 4.19489 4.36017 4.57964 4.67115 4.77800 4.87579 4.95291 5.03597 5.10696 5.20761 5.48365 5.65367 5.72189 5.94894 6.17695 6.30529 6.71592 7.30395 7.35561 8.88221 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.048058 B = 0.010325 C = 0.010288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.490020 B = 2711.195726 C = 2720.935102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.162 3.838 3 C -0.233 4.233 4 C 0.195 3.805 5 C 0.081 3.919 6 H 0.010 0.990 7 C -0.123 4.123 8 C -0.526 4.526 9 H 0.043 0.957 10 C 0.022 3.978 11 N -0.910 5.910 12 Si 0.960 3.040 13 H -0.278 1.278 14 H -0.277 1.277 15 H -0.267 1.267 16 N -0.562 5.562 17 C 0.282 3.718 18 N -0.548 5.548 19 H 0.095 0.905 20 H 0.097 0.903 21 H 0.089 0.911 22 H 0.155 0.845 23 H 0.067 0.933 24 H 0.028 0.972 25 H 0.048 0.952 26 H 0.266 0.734 27 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.168 -5.561 -0.902 10.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.017 3.983 3 C -0.254 4.254 4 C 0.051 3.949 5 C 0.062 3.938 6 H 0.029 0.971 7 C -0.181 4.181 8 C -0.565 4.565 9 H 0.061 0.939 10 C -0.178 4.178 11 N -0.549 5.549 12 Si 0.785 3.215 13 H -0.203 1.203 14 H -0.202 1.202 15 H -0.191 1.191 16 N -0.277 5.277 17 C -0.005 4.005 18 N -0.265 5.265 19 H 0.114 0.886 20 H 0.116 0.884 21 H 0.108 0.892 22 H 0.173 0.827 23 H 0.086 0.914 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -8.592 -6.253 -0.947 10.669 hybrid contribution 0.305 1.131 0.799 1.418 sum -8.287 -5.123 -0.148 9.744 Atomic orbital electron populations 1.20844 0.84860 1.05064 1.04601 1.22366 0.99385 0.87607 0.88977 1.22770 0.95244 1.01417 1.05995 1.22427 0.92893 0.94079 0.85475 1.17740 0.92927 0.86764 0.96417 0.97149 1.21677 0.99640 1.00865 0.95906 1.21004 1.35038 1.08983 0.91467 0.93898 1.25660 0.94536 0.96373 1.01220 1.69976 1.35098 1.17342 1.32456 0.85588 0.78586 0.77599 0.79768 1.20332 1.20192 1.19149 1.68291 1.43345 0.99614 1.16499 1.25473 0.87287 0.97320 0.90467 1.68290 1.10308 1.30662 1.17221 0.88641 0.88420 0.89188 0.82721 0.91393 0.95337 0.93325 0.92424 0.76420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.07 10.22 71.24 0.73 -1.34 15 2 C 0.16 5.31 6.82 42.58 0.29 5.60 15 3 C -0.23 -8.89 8.94 22.44 0.20 -8.69 15 4 C 0.19 8.96 5.76 42.57 0.25 9.20 15 5 C 0.08 4.21 2.65 -12.29 -0.03 4.18 15 6 H 0.01 0.61 8.14 -2.39 -0.02 0.59 15 7 C -0.12 -5.76 8.42 71.98 0.61 -5.15 15 8 C -0.53 -29.41 8.55 25.60 0.22 -29.19 15 9 H 0.04 2.42 7.74 -2.91 -0.02 2.40 15 10 C 0.02 1.21 5.30 84.66 0.45 1.66 15 11 N -0.91 -51.54 11.32 21.45 0.24 -51.30 15 12 Si 0.96 43.22 29.54 68.60 2.03 45.25 15 13 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15 14 H -0.28 -12.01 7.11 99.48 0.71 -11.31 15 15 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 16 N -0.56 -25.08 10.38 -188.08 -1.95 -27.03 15 17 C 0.28 10.25 12.29 180.88 2.22 12.47 15 18 N -0.55 -18.99 10.38 -188.06 -1.95 -20.94 15 19 H 0.10 1.80 8.14 -2.39 -0.02 1.78 15 20 H 0.10 1.71 8.10 -2.39 -0.02 1.69 15 21 H 0.09 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.16 5.39 6.44 -2.91 -0.02 5.38 15 23 H 0.07 3.52 6.07 -2.39 -0.01 3.50 15 24 H 0.03 1.19 8.14 -2.39 -0.02 1.17 15 25 H 0.05 2.07 6.58 -2.38 -0.02 2.06 15 26 H 0.27 14.25 8.31 -92.71 -0.77 13.48 15 27 H 0.22 6.00 8.06 -2.91 -0.02 5.98 15 Total: -1.00 -63.94 235.74 4.45 -59.48 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 1.16 Total: 5.80 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 4.93 Total: -11.27 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -3.66 Total: -99.27 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -63.94 4.45 -59.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260408650.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.079 kcal (2) G-P(sol) polarization free energy of solvation -63.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds