Wall clock time and date at job start Mon Mar 30 2020 02:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47599 * 2 1 4 4 H 1.09002 * 109.46964 * 54.44792 * 3 2 1 5 5 C 1.50694 * 109.47416 * 174.45171 * 3 2 1 6 6 H 1.08000 * 119.99650 * 114.59756 * 5 3 2 7 7 C 1.37874 * 120.00025 * 294.59121 * 5 3 2 8 8 N 1.31514 * 120.00275 * 350.41774 * 7 5 3 9 9 Si 1.86804 * 119.99966 * 170.41785 * 7 5 3 10 10 H 1.48495 * 109.47215 * 59.99922 * 9 7 5 11 11 H 1.48501 * 109.47089 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47084 * 300.00329 * 9 7 5 13 13 C 1.50698 * 109.46924 * 294.45590 * 3 2 1 14 14 C 1.38394 * 119.99902 * 274.71687 * 13 3 2 15 15 N 1.32125 * 119.99676 * 179.78027 * 14 13 3 16 16 C 1.32154 * 120.00061 * 0.49617 * 15 14 13 17 17 C 1.38348 * 120.00398 * 359.73768 * 16 15 14 18 18 N 1.32126 * 120.00602 * 94.99303 * 13 3 2 19 19 H 1.09002 * 109.47175 * 176.14115 * 1 2 3 20 20 H 1.08999 * 109.47339 * 56.13952 * 1 2 3 21 21 H 1.08999 * 109.47225 * 296.14371 * 1 2 3 22 22 H 1.09003 * 109.47368 * 120.00386 * 2 1 3 23 23 H 1.09002 * 109.47025 * 240.00026 * 2 1 3 24 24 H 0.96997 * 120.00314 * 179.97438 * 8 7 5 25 25 H 1.07994 * 119.99906 * 0.02647 * 14 13 3 26 26 H 1.08000 * 119.99935 * 179.70957 * 16 15 14 27 27 H 1.07991 * 120.00244 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5978 1.9842 0.8361 5 6 3.5407 1.4446 0.1374 6 1 4.1565 1.8071 -0.6724 7 6 4.1275 0.9840 1.2969 8 7 3.3851 0.7206 2.3499 9 14 5.9772 0.7339 1.3721 10 1 6.6623 2.0255 1.1119 11 1 6.3551 0.2363 2.7192 12 1 6.3848 -0.2582 0.3450 13 6 1.6530 2.1121 -1.2933 14 6 2.4565 1.9740 -2.4116 15 7 2.1149 2.5575 -3.5467 16 6 1.0109 3.2812 -3.6115 17 6 0.2101 3.4233 -2.4924 18 7 0.5493 2.8356 -1.3583 19 1 -0.3634 -1.0253 -0.0692 20 1 -0.3634 0.5726 -0.8533 21 1 -0.3633 0.4528 0.9225 22 1 1.8933 -0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.7978 0.3962 3.1655 25 1 3.3607 1.3860 -2.3575 26 1 0.7341 3.7620 -4.5381 27 1 -0.6917 4.0149 -2.5453 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414257.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:03 Heat of formation + Delta-G solvation = 30.816088 kcal Electronic energy + Delta-G solvation = -11734.494749 eV Core-core repulsion = 9684.990164 eV Total energy + Delta-G solvation = -2049.504585 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.37328 -35.37384 -33.38419 -31.82358 -30.44382 -27.34529 -24.12893 -23.70679 -22.38793 -19.79129 -17.15569 -16.37793 -16.01270 -15.04855 -14.43759 -14.24100 -13.42092 -12.85851 -12.65204 -12.02684 -11.59947 -11.27604 -10.92551 -10.86181 -10.74861 -10.52709 -10.17044 -9.97417 -9.68914 -9.15707 -8.54777 -8.33291 -8.19856 -6.14033 -4.18192 1.50827 1.83947 3.27914 3.33071 3.35633 4.32342 4.44237 4.78571 4.97198 5.20158 5.24641 5.48987 6.00302 6.12803 6.18774 6.20110 6.30518 6.46038 6.83957 7.03275 7.12584 7.22321 7.58482 7.70753 7.84459 8.00265 8.18292 8.57052 8.82687 9.45954 10.94865 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.042099 B = 0.012725 C = 0.010662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.938616 B = 2199.938555 C = 2625.466382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C 0.091 3.909 4 H 0.058 0.942 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.070 3.930 8 N -0.881 5.881 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.133 3.867 14 C 0.054 3.946 15 N -0.450 5.450 16 C 0.007 3.993 17 C 0.039 3.961 18 N -0.450 5.450 19 H 0.033 0.967 20 H 0.039 0.961 21 H 0.049 0.951 22 H 0.083 0.917 23 H 0.036 0.964 24 H 0.264 0.736 25 H 0.174 0.826 26 H 0.155 0.845 27 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.782 1.388 -6.521 7.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C 0.072 3.928 4 H 0.076 0.924 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.133 4.133 8 N -0.518 5.518 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.007 4.007 14 C -0.107 4.107 15 N -0.164 5.164 16 C -0.152 4.152 17 C -0.120 4.120 18 N -0.165 5.165 19 H 0.052 0.948 20 H 0.058 0.942 21 H 0.069 0.931 22 H 0.102 0.898 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.191 0.809 26 H 0.172 0.828 27 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.793 1.339 -6.343 7.510 hybrid contribution 0.916 -0.024 0.037 0.917 sum -2.877 1.315 -6.306 7.055 Atomic orbital electron populations 1.21832 0.98551 0.99052 1.00972 1.21485 0.92387 0.98470 1.01672 1.17866 0.96162 0.91512 0.87299 0.92429 1.21063 0.90017 1.43978 1.01557 0.92023 1.24913 0.98210 0.95074 0.95100 1.69959 1.35695 1.44028 1.02092 0.86655 0.85355 0.78786 0.77304 1.20193 1.21172 1.19935 1.23244 0.88056 0.90650 0.98779 1.23818 1.00759 0.97708 0.88410 1.68388 1.14978 1.05832 1.27243 1.23444 0.92981 0.99036 0.99697 1.23634 1.00153 0.98172 0.90051 1.68470 1.16111 1.06296 1.25673 0.94798 0.94236 0.93145 0.89841 0.94517 0.92609 0.80941 0.82807 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.78 37.15 0.36 -2.59 15 2 C -0.10 -2.31 5.28 -26.73 -0.14 -2.45 15 3 C 0.09 2.23 1.97 -92.93 -0.18 2.05 15 4 H 0.06 1.58 8.09 -51.93 -0.42 1.16 15 5 C -0.53 -13.73 7.92 -34.44 -0.27 -14.00 15 6 H 0.06 1.56 6.17 -52.49 -0.32 1.23 15 7 C 0.07 1.86 5.15 -17.82 -0.09 1.77 15 8 N -0.88 -24.27 12.17 55.43 0.67 -23.60 15 9 Si 0.89 20.40 29.55 -169.99 -5.02 15.38 15 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 12 H -0.27 -6.16 7.11 56.52 0.40 -5.75 15 13 C 0.13 2.93 5.00 -82.41 -0.41 2.51 15 14 C 0.05 1.11 10.05 -17.37 -0.17 0.94 15 15 N -0.45 -8.58 10.50 -13.06 -0.14 -8.72 15 16 C 0.01 0.12 11.22 -17.37 -0.19 -0.08 15 17 C 0.04 0.65 11.23 -17.37 -0.20 0.46 15 18 N -0.45 -9.29 9.67 -9.29 -0.09 -9.38 15 19 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 20 H 0.04 0.78 6.70 -51.93 -0.35 0.44 15 21 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.08 2.08 6.79 -51.93 -0.35 1.72 15 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 25 H 0.17 3.51 6.64 -52.49 -0.35 3.16 15 26 H 0.15 1.84 8.06 -52.49 -0.42 1.42 15 27 H 0.16 1.94 8.06 -52.49 -0.42 1.51 15 LS Contribution 234.05 15.07 3.53 3.53 Total: -1.00 -28.18 234.05 -5.39 -33.57 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -3.04 Total: 0.61 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.30 Total: -11.39 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.45 Total: -41.70 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.18 -5.39 -33.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414257.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.385 kcal (2) G-P(sol) polarization free energy of solvation -28.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds