Wall clock time and date at job start Mon Mar 30 2020 02:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 C 1.50700 * 109.47313 * 65.00349 * 3 2 1 14 14 C 1.38612 * 120.44874 * 84.99552 * 13 3 2 15 15 C 1.38571 * 118.40149 * 180.02562 * 14 13 3 16 16 N 1.32353 * 119.10470 * 0.02562 * 15 14 13 17 17 C 1.31783 * 120.81771 * 359.97438 * 16 15 14 18 18 N 1.31808 * 121.75291 * 359.72562 * 17 16 15 19 19 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 20 20 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 22 22 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 23 23 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 25 25 H 1.08006 * 120.80594 * 359.97438 * 14 13 3 26 26 H 1.08001 * 120.45053 * 180.02562 * 15 14 13 27 27 H 1.08000 * 119.12238 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 6 1.6414 2.1163 1.2877 14 6 2.4262 1.9829 2.4225 15 6 2.0195 2.6202 3.5838 16 7 0.9024 3.3298 3.5713 17 6 0.1812 3.4344 2.4732 18 7 0.5401 2.8471 1.3491 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.8295 -0.0694 -2.9455 25 1 3.3325 1.3958 2.4023 26 1 2.6061 2.5389 4.4869 27 1 -0.7259 4.0201 2.4940 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260454929.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:55 Heat of formation + Delta-G solvation = 31.034796 kcal Electronic energy + Delta-G solvation = -11737.774812 eV Core-core repulsion = 9688.279711 eV Total energy + Delta-G solvation = -2049.495101 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.28869 -35.50557 -32.75264 -31.69382 -30.87324 -27.48029 -24.19329 -23.52615 -22.37688 -19.82162 -17.08713 -16.21620 -15.96428 -14.67257 -14.47422 -14.22423 -13.38634 -13.09473 -12.77039 -12.29787 -11.49580 -11.27766 -10.93835 -10.80562 -10.31059 -10.26612 -10.02152 -9.83655 -9.63465 -9.05422 -8.73928 -8.50195 -8.36484 -6.12880 -4.21390 1.63308 1.82128 3.25008 3.30510 3.32309 4.30438 4.51186 4.69909 4.91719 5.18695 5.33329 5.74944 6.00059 6.19149 6.24120 6.29506 6.45410 6.62696 6.87167 7.05199 7.17095 7.25392 7.54177 7.65331 7.86055 7.95907 8.21788 8.76151 8.83545 9.43667 10.92865 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.042254 B = 0.012687 C = 0.010544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.500041 B = 2206.470517 C = 2654.832721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C 0.087 3.913 4 H 0.052 0.948 5 C -0.522 4.522 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.218 3.782 14 C -0.214 4.214 15 C 0.124 3.876 16 N -0.547 5.547 17 C 0.275 3.725 18 N -0.527 5.527 19 H 0.049 0.951 20 H 0.033 0.967 21 H 0.034 0.966 22 H 0.103 0.897 23 H 0.033 0.967 24 H 0.264 0.736 25 H 0.150 0.850 26 H 0.156 0.844 27 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.007 0.944 6.164 6.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C 0.068 3.932 4 H 0.070 0.930 5 C -0.561 4.561 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.073 3.927 14 C -0.236 4.236 15 C -0.039 4.039 16 N -0.263 5.263 17 C -0.014 4.014 18 N -0.242 5.242 19 H 0.068 0.932 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.121 0.879 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.167 0.833 26 H 0.173 0.827 27 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.818 1.396 6.006 6.779 hybrid contribution 1.750 -0.454 -0.063 1.809 sum -1.067 0.942 5.942 6.110 Atomic orbital electron populations 1.21825 0.98770 0.99018 1.00632 1.21551 0.92059 0.98209 1.02840 1.17954 0.96011 0.91910 0.87301 0.92985 1.21093 0.90067 1.38673 1.06237 0.92082 1.24929 0.98395 0.94864 0.95415 1.69861 1.35148 1.37700 1.09441 0.86585 0.85179 0.78357 0.77507 1.20099 1.21119 1.20204 1.22737 0.85946 0.86792 0.97206 1.22927 1.03267 1.02979 0.94392 1.23062 0.92098 0.90990 0.97782 1.68270 1.07527 1.19486 1.31001 1.24762 0.97971 0.94577 0.84059 1.68412 1.17547 1.09785 1.28428 0.93217 0.94820 0.94640 0.87862 0.94832 0.92592 0.83258 0.82701 0.80051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.71 37.16 0.36 -2.61 15 2 C -0.11 -2.50 5.23 -26.73 -0.14 -2.64 15 3 C 0.09 2.14 2.13 -92.92 -0.20 1.94 15 4 H 0.05 1.42 8.14 -51.93 -0.42 1.00 15 5 C -0.52 -13.53 7.94 -34.44 -0.27 -13.80 15 6 H 0.06 1.53 6.38 -52.49 -0.33 1.20 15 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 15 8 N -0.88 -24.04 11.28 55.43 0.63 -23.42 15 9 Si 0.90 20.29 29.54 -169.99 -5.02 15.26 15 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 13 C 0.22 4.79 4.99 -82.24 -0.41 4.38 15 14 C -0.21 -4.16 8.96 -39.32 -0.35 -4.52 15 15 C 0.12 2.12 11.30 -17.20 -0.19 1.93 15 16 N -0.55 -9.81 10.44 -14.58 -0.15 -9.96 15 17 C 0.27 4.96 12.29 -92.15 -1.13 3.82 15 18 N -0.53 -11.02 9.77 -10.80 -0.11 -11.13 15 19 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 20 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.03 0.71 6.92 -51.93 -0.36 0.35 15 22 H 0.10 2.63 5.94 -51.93 -0.31 2.32 15 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 25 H 0.15 2.82 6.87 -52.48 -0.36 2.46 15 26 H 0.16 2.04 8.06 -52.49 -0.42 1.62 15 27 H 0.18 2.57 8.06 -52.49 -0.42 2.15 15 LS Contribution 233.27 15.07 3.52 3.52 Total: -1.00 -27.83 233.27 -6.61 -34.44 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.03 Total: 1.12 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.43 Total: -9.83 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.37 Total: -44.51 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -27.83 -6.61 -34.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260454929.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.471 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds