Wall clock time and date at job start Mon Mar 30 2020 02:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 C 1.50700 * 109.47313 * 65.00349 * 3 2 1 14 14 C 1.38612 * 120.44874 * 84.99552 * 13 3 2 15 15 C 1.38571 * 118.40149 * 180.02562 * 14 13 3 16 16 N 1.32353 * 119.10470 * 0.02562 * 15 14 13 17 17 C 1.31783 * 120.81771 * 359.97438 * 16 15 14 18 18 N 1.31808 * 121.75291 * 359.72562 * 17 16 15 19 19 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 20 20 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 22 22 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 23 23 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 25 25 H 1.08006 * 120.80594 * 359.97438 * 14 13 3 26 26 H 1.08001 * 120.45053 * 180.02562 * 15 14 13 27 27 H 1.08000 * 119.12238 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 6 1.6414 2.1163 1.2877 14 6 2.4262 1.9829 2.4225 15 6 2.0195 2.6202 3.5838 16 7 0.9024 3.3298 3.5713 17 6 0.1812 3.4344 2.4732 18 7 0.5401 2.8471 1.3491 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.8295 -0.0694 -2.9455 25 1 3.3325 1.3958 2.4023 26 1 2.6061 2.5389 4.4869 27 1 -0.7259 4.0201 2.4940 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260454929.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:55 Heat of formation + Delta-G solvation = 15.314027 kcal Electronic energy + Delta-G solvation = -11738.456516 eV Core-core repulsion = 9688.279711 eV Total energy + Delta-G solvation = -2050.176805 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.78281 -37.28243 -34.41128 -33.45498 -32.46936 -29.29493 -25.96315 -25.02428 -24.06059 -21.59506 -18.80083 -17.82099 -17.66607 -16.41805 -16.05143 -15.80674 -15.05831 -14.71255 -14.33012 -14.01404 -13.31890 -13.12789 -12.72621 -12.59182 -12.06603 -11.84437 -11.79992 -11.56739 -11.33241 -10.89646 -10.49079 -10.22322 -9.96395 -8.12030 -6.27062 0.18845 0.30448 1.45880 1.46606 1.54084 2.42423 3.01419 3.17694 3.40473 3.43785 3.89810 4.35165 4.38806 4.51991 4.59522 4.73113 4.79066 5.09472 5.10046 5.29907 5.40070 5.60199 5.63807 5.80622 6.02150 6.18070 6.34678 6.79395 7.32265 7.41455 8.93230 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.042254 B = 0.012687 C = 0.010544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.500041 B = 2206.470517 C = 2654.832721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.102 4.102 3 C 0.090 3.910 4 H 0.010 0.990 5 C -0.535 4.535 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.959 3.041 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.194 3.806 14 C -0.224 4.224 15 C 0.142 3.858 16 N -0.547 5.547 17 C 0.275 3.725 18 N -0.551 5.551 19 H 0.039 0.961 20 H 0.055 0.945 21 H 0.037 0.963 22 H 0.076 0.924 23 H 0.036 0.964 24 H 0.264 0.736 25 H 0.151 0.849 26 H 0.200 0.800 27 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.629 1.265 7.979 8.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.141 4.141 3 C 0.070 3.930 4 H 0.028 0.972 5 C -0.573 4.573 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.784 3.216 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.049 3.951 14 C -0.246 4.246 15 C -0.023 4.023 16 N -0.262 5.262 17 C -0.013 4.013 18 N -0.266 5.266 19 H 0.058 0.942 20 H 0.074 0.926 21 H 0.056 0.944 22 H 0.095 0.905 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.169 0.831 26 H 0.217 0.783 27 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -2.447 1.718 7.825 8.377 hybrid contribution 1.577 -0.499 -0.574 1.751 sum -0.869 1.219 7.251 7.404 Atomic orbital electron populations 1.21678 0.96751 1.00342 1.00223 1.21400 0.93844 0.97349 1.01530 1.17734 0.95269 0.92371 0.87582 0.97222 1.21425 0.91105 1.38377 1.06408 0.91631 1.25710 1.02629 0.94604 0.95167 1.70002 1.36784 1.38463 1.09881 0.85602 0.80074 0.78287 0.77663 1.18904 1.21096 1.20074 1.22376 0.87474 0.88219 0.96992 1.22958 1.03215 1.03877 0.94578 1.23702 0.91594 0.88736 0.98243 1.68421 1.07744 1.19391 1.30636 1.25464 0.98801 0.93808 0.83182 1.68355 1.17623 1.10527 1.30095 0.94179 0.92555 0.94375 0.90523 0.94523 0.92713 0.83096 0.78284 0.76562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.42 9.71 71.98 0.70 -4.72 15 2 C -0.10 -4.83 5.23 30.59 0.16 -4.67 15 3 C 0.09 4.50 2.13 -12.29 -0.03 4.48 15 4 H 0.01 0.56 8.14 -2.38 -0.02 0.54 15 5 C -0.53 -28.05 7.94 25.60 0.20 -27.85 15 6 H 0.07 3.29 6.38 -2.91 -0.02 3.27 15 7 C 0.02 0.98 5.29 84.66 0.45 1.43 15 8 N -0.91 -50.88 11.28 21.45 0.24 -50.64 15 9 Si 0.96 41.62 29.54 68.60 2.03 43.64 15 10 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 11 H -0.29 -12.28 7.11 99.48 0.71 -11.58 15 12 H -0.28 -11.82 7.11 99.48 0.71 -11.11 15 13 C 0.19 8.46 4.99 42.57 0.21 8.68 15 14 C -0.22 -8.39 8.96 22.44 0.20 -8.19 15 15 C 0.14 4.37 11.30 84.69 0.96 5.33 15 16 N -0.55 -17.83 10.44 -200.05 -2.09 -19.92 15 17 C 0.28 9.27 12.29 180.88 2.22 11.50 15 18 N -0.55 -22.62 9.77 -188.07 -1.84 -24.46 15 19 H 0.04 1.67 8.14 -2.39 -0.02 1.65 15 20 H 0.06 2.00 8.14 -2.39 -0.02 1.98 15 21 H 0.04 1.51 6.92 -2.38 -0.02 1.50 15 22 H 0.08 4.03 5.94 -2.38 -0.01 4.01 15 23 H 0.04 1.65 8.14 -2.39 -0.02 1.63 15 24 H 0.26 14.01 8.31 -92.70 -0.77 13.24 15 25 H 0.15 5.50 6.87 -2.91 -0.02 5.48 15 26 H 0.20 4.27 8.06 -2.91 -0.02 4.25 15 27 H 0.22 5.47 8.06 -2.91 -0.02 5.45 15 Total: -1.00 -59.87 233.27 4.58 -55.29 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 1.16 Total: 10.11 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 5.08 Total: -14.02 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -3.68 Total: -95.02 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Total: -59.87 4.58 -55.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260454929.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.605 kcal (2) G-P(sol) polarization free energy of solvation -59.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds