Wall clock time and date at job start Mon Mar 30 2020 02:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46810 * 2 1 4 4 H 1.09000 * 109.47560 * 305.66411 * 3 2 1 5 5 C 1.50698 * 109.47259 * 65.66549 * 3 2 1 6 6 H 1.07993 * 120.00134 * 35.24560 * 5 3 2 7 7 C 1.37879 * 119.99825 * 215.24002 * 5 3 2 8 8 N 1.31511 * 120.00452 * 354.36013 * 7 5 3 9 9 Si 1.86800 * 119.99731 * 174.35113 * 7 5 3 10 10 H 1.48503 * 109.46922 * 90.00524 * 9 7 5 11 11 H 1.48498 * 109.47359 * 210.00535 * 9 7 5 12 12 H 1.48496 * 109.47553 * 330.00568 * 9 7 5 13 13 C 1.50705 * 109.46914 * 185.66352 * 3 2 1 14 14 C 1.38597 * 120.79964 * 299.72469 * 13 3 2 15 15 N 1.32337 * 119.10140 * 179.71815 * 14 13 3 16 16 C 1.31792 * 120.82049 * 0.56239 * 15 14 13 17 17 N 1.31796 * 121.75233 * 359.71015 * 16 15 14 18 18 C 1.32327 * 120.82147 * 359.97438 * 17 16 15 19 19 H 1.09002 * 109.47477 * 63.92282 * 1 2 3 20 20 H 1.08994 * 109.47357 * 183.92536 * 1 2 3 21 21 H 1.09002 * 109.47471 * 303.92481 * 1 2 3 22 22 H 1.08996 * 109.46867 * 240.00173 * 2 1 3 23 23 H 1.08997 * 109.46942 * 119.99482 * 2 1 3 24 24 H 0.96999 * 120.00245 * 179.97438 * 8 7 5 25 25 H 1.07998 * 120.45016 * 359.97438 * 14 13 3 26 26 H 1.07995 * 119.12831 * 179.72738 * 16 15 14 27 27 H 1.07998 * 120.45333 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5962 1.9849 -0.8349 5 6 1.6554 2.1113 1.2946 6 1 1.6423 1.5431 2.2128 7 6 1.3203 3.4487 1.3066 8 7 1.4427 4.1672 0.2119 9 14 0.6924 4.2401 2.8779 10 1 1.8390 4.7755 3.6549 11 1 -0.2355 5.3483 2.5374 12 1 -0.0255 3.2255 3.6905 13 6 3.5404 1.4449 -0.1402 14 6 4.3423 0.8220 0.8031 15 7 5.6559 0.8398 0.6438 16 6 6.2027 1.4489 -0.3891 17 7 5.4721 2.0561 -1.3027 18 6 4.1520 2.0744 -1.2129 19 1 -0.3634 0.4517 -0.9230 20 1 -0.3634 -1.0252 0.0703 21 1 -0.3634 0.5735 0.8527 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5137 0.8900 24 1 1.2066 5.1080 0.2204 25 1 3.9009 0.3253 1.6545 26 1 7.2779 1.4503 -0.4899 27 1 3.5592 2.5735 -1.9651 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260506307.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:08 Heat of formation + Delta-G solvation = 24.435722 kcal Electronic energy + Delta-G solvation = -11724.318440 eV Core-core repulsion = 9674.537181 eV Total energy + Delta-G solvation = -2049.781259 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.07154 -35.47128 -32.78604 -32.01536 -30.73750 -26.81424 -24.27749 -23.66247 -22.22937 -19.71179 -17.04408 -16.80415 -15.96802 -14.68303 -13.92764 -13.82687 -13.46818 -12.83749 -12.61355 -12.58299 -11.68194 -11.27942 -11.14560 -11.01642 -10.52484 -10.28583 -9.93806 -9.86173 -9.55312 -9.31339 -8.64623 -8.33483 -8.15944 -6.21156 -4.24687 1.92140 1.95329 3.21430 3.29222 3.31564 4.29402 4.68381 4.92012 5.08724 5.13773 5.65801 5.84992 5.97416 6.09858 6.18201 6.23393 6.62529 6.72736 6.76245 6.88623 7.08076 7.19431 7.35119 7.56937 7.73863 7.87347 8.16180 8.82065 8.90204 9.39558 10.87130 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.032497 B = 0.014318 C = 0.011947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.423710 B = 1955.141085 C = 2343.174116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.070 3.930 4 H 0.069 0.931 5 C -0.508 4.508 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.271 1.271 13 C -0.114 4.114 14 C 0.134 3.866 15 N -0.530 5.530 16 C 0.241 3.759 17 N -0.528 5.528 18 C 0.130 3.870 19 H 0.043 0.957 20 H 0.030 0.970 21 H 0.066 0.934 22 H 0.032 0.968 23 H 0.046 0.954 24 H 0.264 0.736 25 H 0.157 0.843 26 H 0.179 0.821 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 -4.764 -0.718 4.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.050 3.950 4 H 0.087 0.913 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.196 1.196 13 C -0.118 4.118 14 C -0.032 4.032 15 N -0.244 5.244 16 C -0.047 4.047 17 N -0.241 5.241 18 C -0.035 4.035 19 H 0.062 0.938 20 H 0.050 0.950 21 H 0.085 0.915 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.174 0.826 26 H 0.195 0.805 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.179 -4.567 -0.894 5.139 hybrid contribution -1.135 0.754 0.985 1.681 sum 1.044 -3.814 0.090 3.955 Atomic orbital electron populations 1.21605 0.96308 0.99058 1.02310 1.21554 0.95847 0.98158 0.98910 1.18035 0.84691 0.92288 0.99950 0.91273 1.20980 1.45634 0.94574 0.93330 0.92178 1.25023 0.94923 0.97397 0.96324 1.69905 1.46955 1.07764 1.27328 0.86590 0.78921 0.79172 0.83415 1.20687 1.21024 1.19561 1.22587 1.02247 0.93730 0.93232 1.22914 0.88111 0.94691 0.97436 1.68236 1.13974 1.19200 1.22980 1.24439 1.00263 0.92726 0.87244 1.68229 1.08004 1.18332 1.29575 1.23079 0.89711 0.94124 0.96555 0.93784 0.95040 0.91451 0.94902 0.93481 0.92597 0.82582 0.80453 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.79 37.16 0.36 -2.08 15 2 C -0.11 -2.05 5.13 -26.73 -0.14 -2.19 15 3 C 0.07 1.58 2.06 -92.92 -0.19 1.39 15 4 H 0.07 1.71 7.19 -51.93 -0.37 1.33 15 5 C -0.51 -12.60 6.91 -34.44 -0.24 -12.84 15 6 H 0.06 1.48 7.82 -52.49 -0.41 1.07 15 7 C 0.07 1.74 5.45 -17.82 -0.10 1.64 15 8 N -0.88 -23.90 12.84 55.43 0.71 -23.19 15 9 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 15 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 12 H -0.27 -6.05 7.11 56.52 0.40 -5.64 15 13 C -0.11 -2.48 4.78 -104.35 -0.50 -2.98 15 14 C 0.13 2.79 10.21 -17.20 -0.18 2.62 15 15 N -0.53 -10.76 10.44 -14.58 -0.15 -10.91 15 16 C 0.24 4.63 12.29 -92.15 -1.13 3.50 15 17 N -0.53 -10.91 10.44 -14.58 -0.15 -11.07 15 18 C 0.13 2.80 10.96 -17.20 -0.19 2.61 15 19 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 20 H 0.03 0.48 8.14 -51.93 -0.42 0.06 15 21 H 0.07 1.31 7.28 -51.93 -0.38 0.94 15 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 23 H 0.05 0.87 7.71 -51.93 -0.40 0.47 15 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 25 H 0.16 3.02 7.76 -52.49 -0.41 2.61 15 26 H 0.18 2.70 8.06 -52.49 -0.42 2.28 15 27 H 0.16 3.26 8.01 -52.49 -0.42 2.84 15 LS Contribution 238.73 15.07 3.60 3.60 Total: -1.00 -27.22 238.73 -6.53 -33.75 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -3.22 Total: 0.82 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -2.29 Total: -8.34 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.41 Total: -45.17 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.22 -6.53 -33.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260506307.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.185 kcal (2) G-P(sol) polarization free energy of solvation -27.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds