Wall clock time and date at job start Mon Mar 30 2020 02:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46810 * 2 1 4 4 H 1.09000 * 109.47560 * 305.66411 * 3 2 1 5 5 C 1.50698 * 109.47259 * 65.66549 * 3 2 1 6 6 H 1.07993 * 120.00134 * 35.24560 * 5 3 2 7 7 C 1.37879 * 119.99825 * 215.24002 * 5 3 2 8 8 N 1.31511 * 120.00452 * 354.36013 * 7 5 3 9 9 Si 1.86800 * 119.99731 * 174.35113 * 7 5 3 10 10 H 1.48503 * 109.46922 * 90.00524 * 9 7 5 11 11 H 1.48498 * 109.47359 * 210.00535 * 9 7 5 12 12 H 1.48496 * 109.47553 * 330.00568 * 9 7 5 13 13 C 1.50705 * 109.46914 * 185.66352 * 3 2 1 14 14 C 1.38597 * 120.79964 * 299.72469 * 13 3 2 15 15 N 1.32337 * 119.10140 * 179.71815 * 14 13 3 16 16 C 1.31792 * 120.82049 * 0.56239 * 15 14 13 17 17 N 1.31796 * 121.75233 * 359.71015 * 16 15 14 18 18 C 1.32327 * 120.82147 * 359.97438 * 17 16 15 19 19 H 1.09002 * 109.47477 * 63.92282 * 1 2 3 20 20 H 1.08994 * 109.47357 * 183.92536 * 1 2 3 21 21 H 1.09002 * 109.47471 * 303.92481 * 1 2 3 22 22 H 1.08996 * 109.46867 * 240.00173 * 2 1 3 23 23 H 1.08997 * 109.46942 * 119.99482 * 2 1 3 24 24 H 0.96999 * 120.00245 * 179.97438 * 8 7 5 25 25 H 1.07998 * 120.45016 * 359.97438 * 14 13 3 26 26 H 1.07995 * 119.12831 * 179.72738 * 16 15 14 27 27 H 1.07998 * 120.45333 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5962 1.9849 -0.8349 5 6 1.6554 2.1113 1.2946 6 1 1.6423 1.5431 2.2128 7 6 1.3203 3.4487 1.3066 8 7 1.4427 4.1672 0.2119 9 14 0.6924 4.2401 2.8779 10 1 1.8390 4.7755 3.6549 11 1 -0.2355 5.3483 2.5374 12 1 -0.0255 3.2255 3.6905 13 6 3.5404 1.4449 -0.1402 14 6 4.3423 0.8220 0.8031 15 7 5.6559 0.8398 0.6438 16 6 6.2027 1.4489 -0.3891 17 7 5.4721 2.0561 -1.3027 18 6 4.1520 2.0744 -1.2129 19 1 -0.3634 0.4517 -0.9230 20 1 -0.3634 -1.0252 0.0703 21 1 -0.3634 0.5735 0.8527 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5137 0.8900 24 1 1.2066 5.1080 0.2204 25 1 3.9009 0.3253 1.6545 26 1 7.2779 1.4503 -0.4899 27 1 3.5592 2.5735 -1.9651 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260506307.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:08 Heat of formation + Delta-G solvation = 9.769768 kcal Electronic energy + Delta-G solvation = -11724.954403 eV Core-core repulsion = 9674.537181 eV Total energy + Delta-G solvation = -2050.417222 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.68952 -37.17306 -34.40482 -33.89635 -32.30853 -28.55728 -26.06345 -25.30374 -23.79874 -21.40161 -18.84394 -18.36939 -17.70651 -16.55706 -15.53956 -15.46511 -15.10061 -14.38090 -14.33487 -14.24702 -13.41038 -12.93131 -12.87163 -12.72709 -12.24073 -11.94112 -11.56035 -11.48856 -11.29754 -11.06277 -10.56184 -9.97663 -9.84989 -8.15994 -6.23217 0.29329 0.31234 1.40011 1.43758 1.51569 2.41365 3.04402 3.19533 3.47041 3.48229 4.03177 4.23654 4.36580 4.56230 4.66387 4.73471 5.06482 5.13807 5.22298 5.33887 5.48394 5.63570 5.69949 5.74903 5.87144 6.23303 6.29070 6.90030 7.29597 7.43036 8.91612 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.032497 B = 0.014318 C = 0.011947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.423710 B = 1955.141085 C = 2343.174116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C 0.073 3.927 4 H 0.040 0.960 5 C -0.507 4.507 6 H 0.061 0.939 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.944 3.056 10 H -0.286 1.286 11 H -0.286 1.286 12 H -0.261 1.261 13 C -0.131 4.131 14 C 0.134 3.866 15 N -0.534 5.534 16 C 0.245 3.755 17 N -0.536 5.536 18 C 0.121 3.879 19 H 0.039 0.961 20 H 0.061 0.939 21 H 0.048 0.952 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.261 0.739 25 H 0.170 0.830 26 H 0.219 0.781 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 -5.755 -0.070 6.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.140 4.140 3 C 0.053 3.947 4 H 0.058 0.942 5 C -0.544 4.544 6 H 0.079 0.921 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.770 3.230 10 H -0.212 1.212 11 H -0.212 1.212 12 H -0.185 1.185 13 C -0.135 4.135 14 C -0.031 4.031 15 N -0.248 5.248 16 C -0.042 4.042 17 N -0.250 5.250 18 C -0.043 4.043 19 H 0.058 0.942 20 H 0.080 0.920 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.187 0.813 26 H 0.236 0.764 27 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.714 -5.575 -0.241 6.205 hybrid contribution -1.222 1.004 0.750 1.750 sum 1.492 -4.571 0.510 4.835 Atomic orbital electron populations 1.21560 0.95500 1.00604 1.01241 1.21498 0.96544 0.96071 0.99922 1.17929 0.85254 0.93764 0.97791 0.94163 1.21265 1.44478 0.94491 0.94212 0.92068 1.25674 0.95684 0.98216 0.98550 1.70020 1.48717 1.07713 1.28899 0.85768 0.78151 0.78451 0.80618 1.21244 1.21215 1.18485 1.22508 1.01856 0.95025 0.94135 1.23123 0.88426 0.94229 0.97358 1.68339 1.13528 1.19545 1.23383 1.25291 1.01929 0.90924 0.86095 1.68298 1.07552 1.18918 1.30250 1.23144 0.90353 0.94090 0.96732 0.94218 0.92023 0.93289 0.93666 0.92558 0.93028 0.81329 0.76433 0.82663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 9.79 71.98 0.71 -3.86 15 2 C -0.10 -3.79 5.13 30.59 0.16 -3.64 15 3 C 0.07 3.25 2.06 -12.28 -0.03 3.22 15 4 H 0.04 2.02 7.19 -2.39 -0.02 2.00 15 5 C -0.51 -24.94 6.91 25.60 0.18 -24.76 15 6 H 0.06 2.94 7.82 -2.91 -0.02 2.92 15 7 C 0.02 0.97 5.45 84.66 0.46 1.43 15 8 N -0.92 -50.28 12.84 21.45 0.28 -50.01 15 9 Si 0.94 41.67 29.54 68.60 2.03 43.70 15 10 H -0.29 -12.78 7.11 99.48 0.71 -12.07 15 11 H -0.29 -12.62 7.11 99.48 0.71 -11.91 15 12 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 13 C -0.13 -5.63 4.78 -19.69 -0.09 -5.72 15 14 C 0.13 5.37 10.21 84.70 0.87 6.24 15 15 N -0.53 -20.44 10.44 -200.05 -2.09 -22.52 15 16 C 0.25 8.78 12.29 180.88 2.22 11.00 15 17 N -0.54 -21.40 10.44 -200.05 -2.09 -23.48 15 18 C 0.12 5.18 10.96 84.71 0.93 6.10 15 19 H 0.04 1.38 8.14 -2.39 -0.02 1.36 15 20 H 0.06 1.74 8.14 -2.39 -0.02 1.73 15 21 H 0.05 1.86 7.28 -2.39 -0.02 1.84 15 22 H 0.04 1.55 8.14 -2.39 -0.02 1.53 15 23 H 0.06 1.96 7.71 -2.39 -0.02 1.95 15 24 H 0.26 13.88 8.31 -92.71 -0.77 13.11 15 25 H 0.17 6.19 7.76 -2.91 -0.02 6.17 15 26 H 0.22 5.80 8.06 -2.91 -0.02 5.78 15 27 H 0.16 6.54 8.01 -2.91 -0.02 6.52 15 Total: -1.00 -56.31 238.73 4.67 -51.64 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 1.15 Total: 10.66 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 5.40 Total: -9.98 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -3.90 Total: -96.01 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -56.31 4.67 -51.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260506307.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.406 kcal (2) G-P(sol) polarization free energy of solvation -56.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds