Wall clock time and date at job start Mon Mar 30 2020 02:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37542 * 126.55579 * 2 1 4 4 C 1.39996 * 125.96569 * 0.02562 * 3 2 1 5 5 H 1.08000 * 119.99730 * 5.84880 * 4 3 2 6 6 C 1.40234 * 120.00284 * 185.83963 * 4 3 2 7 7 N 1.30684 * 119.99995 * 184.05817 * 6 4 3 8 8 Si 1.86804 * 119.99843 * 4.05675 * 6 4 3 9 9 H 1.48496 * 109.46976 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.46919 * 299.99881 * 8 6 4 11 11 H 1.48497 * 109.47106 * 59.99821 * 8 6 4 12 12 N 1.32981 * 108.06952 * 179.77210 * 3 2 1 13 13 C 1.32750 * 109.22902 * 0.21905 * 12 3 2 14 14 C 1.36224 * 108.62025 * 0.02562 * 13 12 3 15 15 C 1.50695 * 126.40264 * 180.02562 * 14 13 12 16 16 C 1.53001 * 117.50179 * 33.72725 * 15 14 13 17 17 C 1.53000 * 117.50421 * 325.06528 * 15 14 13 18 18 H 1.08999 * 109.46686 * 90.03163 * 1 2 3 19 19 H 1.09003 * 109.47082 * 210.02750 * 1 2 3 20 20 H 1.08995 * 109.47188 * 330.03209 * 1 2 3 21 21 H 0.97000 * 120.00031 * 354.83794 * 7 6 4 22 22 H 1.07999 * 125.69495 * 179.97438 * 13 12 3 23 23 H 1.09002 * 115.54831 * 179.39041 * 15 14 13 24 24 H 1.09005 * 117.49288 * 359.97438 * 16 15 14 25 25 H 1.08997 * 117.50085 * 145.01304 * 16 15 14 26 26 H 1.08998 * 117.49667 * 214.97931 * 17 15 14 27 27 H 1.08999 * 117.49142 * 359.97222 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2842 1.1048 0.0000 4 6 1.8638 2.4402 0.0005 5 1 0.8141 2.6757 0.0963 6 6 2.8055 3.4719 -0.1231 7 7 2.4228 4.7189 -0.0431 8 14 4.6069 3.0638 -0.4021 9 1 5.3904 4.3216 -0.4972 10 1 5.1119 2.2512 0.7336 11 1 4.7503 2.2940 -1.6639 12 7 3.5454 0.6832 0.0050 13 6 3.5627 -0.6442 0.0034 14 6 2.2775 -1.0959 -0.0034 15 6 1.8359 -2.5367 -0.0068 16 6 2.7043 -3.5435 0.7502 17 6 2.6965 -3.5376 -0.7805 18 1 -0.3633 -0.0006 -1.0277 19 1 -0.3633 -0.8898 0.5143 20 1 -0.3633 0.8902 0.5133 21 1 1.4793 4.9332 0.0266 22 1 4.4478 -1.2629 0.0062 23 1 0.7579 -2.6980 -0.0019 24 1 3.5952 -3.1638 1.2504 25 1 2.1976 -4.3674 1.2529 26 1 2.1846 -4.3575 -1.2842 27 1 3.5818 -3.1537 -1.2874 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260521733.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:53 Heat of formation + Delta-G solvation = 62.577959 kcal Electronic energy + Delta-G solvation = -11728.453291 eV Core-core repulsion = 9680.326004 eV Total energy + Delta-G solvation = -2048.127287 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.42002 -36.54283 -33.46229 -32.73596 -29.09488 -26.18414 -24.75386 -22.18174 -22.04972 -19.96407 -18.42135 -17.50872 -16.16189 -14.74077 -14.45610 -13.91355 -13.37407 -13.09455 -12.94521 -12.11008 -11.87989 -11.68895 -11.26846 -11.16685 -10.77884 -10.26691 -10.14252 -10.08618 -9.51867 -9.05996 -8.28350 -7.87782 -7.29344 -7.12686 -4.50382 3.09797 3.71093 3.72189 4.03558 4.17587 4.29282 4.55337 4.60407 5.11814 5.28292 5.36649 5.45755 5.55459 5.77757 5.87737 5.89821 6.03275 6.07828 6.24892 6.31313 6.42577 6.90003 7.22826 7.61453 7.80532 8.01556 8.35524 8.72140 8.93637 9.65422 10.22893 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.054416 B = 0.012605 C = 0.010577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.430457 B = 2220.828654 C = 2646.723791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.503 5.503 3 C 0.377 3.623 4 C -0.510 4.510 5 H 0.077 0.923 6 C 0.062 3.938 7 N -0.825 5.825 8 Si 1.131 2.869 9 H -0.324 1.324 10 H -0.268 1.268 11 H -0.287 1.287 12 N -0.595 5.595 13 C 0.015 3.985 14 C -0.101 4.101 15 C -0.051 4.051 16 C -0.179 4.179 17 C -0.179 4.179 18 H 0.052 0.948 19 H 0.061 0.939 20 H 0.073 0.927 21 H 0.279 0.721 22 H 0.140 0.860 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 -10.846 -0.173 11.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.192 5.192 3 C 0.135 3.865 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.158 4.158 7 N -0.450 5.450 8 Si 0.962 3.038 9 H -0.256 1.256 10 H -0.195 1.195 11 H -0.214 1.214 12 N -0.321 5.321 13 C -0.135 4.135 14 C -0.212 4.212 15 C -0.070 4.070 16 C -0.217 4.217 17 C -0.216 4.216 18 H 0.071 0.929 19 H 0.080 0.920 20 H 0.092 0.908 21 H 0.090 0.910 22 H 0.157 0.843 23 H 0.111 0.889 24 H 0.113 0.887 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.346 -9.695 -0.290 9.705 hybrid contribution -2.680 -1.297 0.169 2.983 sum -3.026 -10.992 -0.121 11.401 Atomic orbital electron populations 1.21452 0.79510 1.02192 1.01227 1.44823 1.05154 1.06057 1.63164 1.20325 0.83760 0.88091 0.94286 1.19390 0.96799 0.87791 1.51048 0.90535 1.27316 1.08672 0.91103 0.88688 1.70646 1.20272 1.19527 1.34573 0.82371 0.70667 0.71033 0.79696 1.25613 1.19475 1.21449 1.69636 1.17892 1.10152 1.34455 1.21468 0.93911 0.91885 1.06205 1.19595 0.90989 0.86661 1.23919 1.19808 0.95974 0.87069 1.04188 1.23025 1.02905 1.01473 0.94296 1.23020 1.02956 1.01519 0.94128 0.92948 0.92019 0.90842 0.91032 0.84263 0.88869 0.88674 0.89429 0.89422 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.85 10.74 59.85 0.64 2.49 15 2 N -0.50 -11.80 3.21 -118.76 -0.38 -12.18 15 3 C 0.38 10.25 7.18 -155.60 -1.12 9.13 15 4 C -0.51 -14.35 9.45 -38.17 -0.36 -14.71 15 5 H 0.08 2.11 7.32 -52.49 -0.38 1.73 15 6 C 0.06 1.76 5.52 -17.29 -0.10 1.67 15 7 N -0.82 -23.34 13.65 55.56 0.76 -22.58 15 8 Si 1.13 29.37 25.88 -169.99 -4.40 24.97 15 9 H -0.32 -8.19 7.11 56.52 0.40 -7.79 15 10 H -0.27 -7.08 6.75 56.52 0.38 -6.69 15 11 H -0.29 -7.55 7.11 56.52 0.40 -7.15 15 12 N -0.60 -16.24 6.41 -12.73 -0.08 -16.32 15 13 C 0.02 0.36 10.92 -17.88 -0.20 0.17 15 14 C -0.10 -2.21 6.66 -81.28 -0.54 -2.75 15 15 C -0.05 -0.86 6.01 -91.77 -0.55 -1.41 15 16 C -0.18 -2.55 10.06 -26.69 -0.27 -2.82 15 17 C -0.18 -2.55 10.06 -26.69 -0.27 -2.82 15 18 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 19 H 0.06 0.95 7.36 -51.93 -0.38 0.57 15 20 H 0.07 1.35 7.33 -51.93 -0.38 0.97 15 21 H 0.28 7.54 8.72 -40.82 -0.36 7.18 15 22 H 0.14 2.87 8.06 -52.49 -0.42 2.45 15 23 H 0.09 1.45 7.37 -51.93 -0.38 1.06 15 24 H 0.09 1.41 7.95 -51.93 -0.41 1.00 15 25 H 0.09 1.05 8.14 -51.93 -0.42 0.63 15 26 H 0.09 1.06 8.14 -51.93 -0.42 0.63 15 27 H 0.09 1.42 7.97 -51.93 -0.41 1.00 15 LS Contribution 233.22 15.07 3.51 3.51 Total: -1.00 -31.02 233.22 -6.56 -37.59 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: -3.22 Total: -3.94 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -2.76 Total: -11.05 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.30 Total: -51.08 kcal Atomic # 14 Polarization: 29.37 SS G_CDS: -4.40 Total: 24.97 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -31.02 -6.56 -37.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260521733.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.166 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds