Wall clock time and date at job start Mon Mar 30 2020 02:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37542 * 126.55579 * 2 1 4 4 C 1.39996 * 125.96569 * 0.02562 * 3 2 1 5 5 H 1.08000 * 119.99730 * 5.84880 * 4 3 2 6 6 C 1.40234 * 120.00284 * 185.83963 * 4 3 2 7 7 N 1.30684 * 119.99995 * 184.05817 * 6 4 3 8 8 Si 1.86804 * 119.99843 * 4.05675 * 6 4 3 9 9 H 1.48496 * 109.46976 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.46919 * 299.99881 * 8 6 4 11 11 H 1.48497 * 109.47106 * 59.99821 * 8 6 4 12 12 N 1.32981 * 108.06952 * 179.77210 * 3 2 1 13 13 C 1.32750 * 109.22902 * 0.21905 * 12 3 2 14 14 C 1.36224 * 108.62025 * 0.02562 * 13 12 3 15 15 C 1.50695 * 126.40264 * 180.02562 * 14 13 12 16 16 C 1.53001 * 117.50179 * 33.72725 * 15 14 13 17 17 C 1.53000 * 117.50421 * 325.06528 * 15 14 13 18 18 H 1.08999 * 109.46686 * 90.03163 * 1 2 3 19 19 H 1.09003 * 109.47082 * 210.02750 * 1 2 3 20 20 H 1.08995 * 109.47188 * 330.03209 * 1 2 3 21 21 H 0.97000 * 120.00031 * 354.83794 * 7 6 4 22 22 H 1.07999 * 125.69495 * 179.97438 * 13 12 3 23 23 H 1.09002 * 115.54831 * 179.39041 * 15 14 13 24 24 H 1.09005 * 117.49288 * 359.97438 * 16 15 14 25 25 H 1.08997 * 117.50085 * 145.01304 * 16 15 14 26 26 H 1.08998 * 117.49667 * 214.97931 * 17 15 14 27 27 H 1.08999 * 117.49142 * 359.97222 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2842 1.1048 0.0000 4 6 1.8638 2.4402 0.0005 5 1 0.8141 2.6757 0.0963 6 6 2.8055 3.4719 -0.1231 7 7 2.4228 4.7189 -0.0431 8 14 4.6069 3.0638 -0.4021 9 1 5.3904 4.3216 -0.4972 10 1 5.1119 2.2512 0.7336 11 1 4.7503 2.2940 -1.6639 12 7 3.5454 0.6832 0.0050 13 6 3.5627 -0.6442 0.0034 14 6 2.2775 -1.0959 -0.0034 15 6 1.8359 -2.5367 -0.0068 16 6 2.7043 -3.5435 0.7502 17 6 2.6965 -3.5376 -0.7805 18 1 -0.3633 -0.0006 -1.0277 19 1 -0.3633 -0.8898 0.5143 20 1 -0.3633 0.8902 0.5133 21 1 1.4793 4.9332 0.0266 22 1 4.4478 -1.2629 0.0062 23 1 0.7579 -2.6980 -0.0019 24 1 3.5952 -3.1638 1.2504 25 1 2.1976 -4.3674 1.2529 26 1 2.1846 -4.3575 -1.2842 27 1 3.5818 -3.1537 -1.2874 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260521733.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:53 Heat of formation + Delta-G solvation = 43.896915 kcal Electronic energy + Delta-G solvation = -11729.263362 eV Core-core repulsion = 9680.326004 eV Total energy + Delta-G solvation = -2048.937358 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.27733 -37.83296 -35.52267 -34.53021 -31.00999 -27.88196 -26.55903 -23.77591 -23.14428 -21.93528 -20.10391 -19.50367 -17.78560 -16.26432 -16.19482 -15.53529 -15.39347 -14.73846 -14.60035 -13.77842 -13.74236 -13.49646 -12.73578 -12.67105 -12.30907 -12.11903 -11.63883 -11.60593 -11.29195 -11.16201 -10.12476 -9.86858 -9.34138 -9.09058 -6.54721 1.24421 1.61199 1.73905 2.05284 2.35460 2.38318 2.52997 3.21367 3.29000 3.85396 4.00180 4.13587 4.27915 4.36622 4.39223 4.45554 4.62524 4.81860 4.83893 5.06758 5.20326 5.34916 5.38071 5.51152 5.92140 6.05967 6.41668 6.70005 6.99100 7.72272 8.11813 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.054416 B = 0.012605 C = 0.010577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.430457 B = 2220.828654 C = 2646.723791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.503 5.503 3 C 0.341 3.659 4 C -0.532 4.532 5 H 0.068 0.932 6 C 0.033 3.967 7 N -0.849 5.849 8 Si 1.167 2.833 9 H -0.316 1.316 10 H -0.279 1.279 11 H -0.296 1.296 12 N -0.618 5.618 13 C -0.032 4.032 14 C -0.067 4.067 15 C -0.084 4.084 16 C -0.161 4.161 17 C -0.161 4.161 18 H 0.068 0.932 19 H 0.098 0.902 20 H 0.068 0.932 21 H 0.278 0.722 22 H 0.162 0.838 23 H 0.114 0.886 24 H 0.086 0.914 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.853 -13.913 -0.211 14.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.190 5.190 3 C 0.096 3.904 4 C -0.572 4.572 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.476 5.476 8 Si 0.998 3.002 9 H -0.248 1.248 10 H -0.206 1.206 11 H -0.224 1.224 12 N -0.345 5.345 13 C -0.179 4.179 14 C -0.179 4.179 15 C -0.103 4.103 16 C -0.198 4.198 17 C -0.198 4.198 18 H 0.087 0.913 19 H 0.117 0.883 20 H 0.087 0.913 21 H 0.088 0.912 22 H 0.179 0.821 23 H 0.132 0.868 24 H 0.104 0.896 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.943 -12.775 -0.326 12.814 hybrid contribution -2.576 -0.635 0.185 2.660 sum -3.519 -13.410 -0.142 13.865 Atomic orbital electron populations 1.21777 0.76650 1.03810 1.02806 1.45211 1.07188 1.05623 1.61013 1.20289 0.84675 0.88769 0.96666 1.19365 0.96399 0.88712 1.52711 0.91373 1.27881 1.10344 0.91264 0.88816 1.70655 1.20250 1.19696 1.37030 0.81841 0.69108 0.70648 0.78576 1.24769 1.20578 1.22409 1.69478 1.18537 1.12311 1.34160 1.21930 0.95915 0.91001 1.09075 1.20478 0.90314 0.88699 1.18424 1.20041 0.97792 0.84327 1.08182 1.23106 1.01624 1.00490 0.94589 1.23102 1.01696 1.00547 0.94473 0.91313 0.88321 0.91347 0.91165 0.82064 0.86784 0.89591 0.86296 0.86313 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.16 10.74 127.77 1.37 4.54 15 2 N -0.50 -22.87 3.21 -529.64 -1.70 -24.57 15 3 C 0.34 18.68 7.18 133.59 0.96 19.64 15 4 C -0.53 -30.64 9.45 23.18 0.22 -30.42 15 5 H 0.07 3.89 7.32 -2.91 -0.02 3.87 15 6 C 0.03 1.89 5.52 85.35 0.47 2.37 15 7 N -0.85 -49.30 13.65 21.88 0.30 -49.00 15 8 Si 1.17 61.28 25.88 68.60 1.78 63.05 15 9 H -0.32 -15.87 7.11 99.48 0.71 -15.16 15 10 H -0.28 -14.89 6.75 99.48 0.67 -14.22 15 11 H -0.30 -15.74 7.11 99.48 0.71 -15.04 15 12 N -0.62 -33.81 6.41 -194.17 -1.25 -35.05 15 13 C -0.03 -1.47 10.92 84.08 0.92 -0.55 15 14 C -0.07 -2.77 6.66 41.37 0.28 -2.50 15 15 C -0.08 -2.47 6.01 -11.54 -0.07 -2.54 15 16 C -0.16 -3.79 10.06 30.62 0.31 -3.49 15 17 C -0.16 -3.81 10.06 30.62 0.31 -3.50 15 18 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 19 H 0.10 2.66 7.36 -2.39 -0.02 2.64 15 20 H 0.07 2.44 7.33 -2.39 -0.02 2.42 15 21 H 0.28 15.52 8.72 -92.71 -0.81 14.71 15 22 H 0.16 6.44 8.06 -2.91 -0.02 6.42 15 23 H 0.11 2.91 7.37 -2.39 -0.02 2.89 15 24 H 0.09 2.23 7.95 -2.38 -0.02 2.21 15 25 H 0.12 2.13 8.14 -2.39 -0.02 2.11 15 26 H 0.12 2.14 8.14 -2.39 -0.02 2.12 15 27 H 0.09 2.24 7.97 -2.39 -0.02 2.22 15 Total: -1.00 -67.66 233.22 4.97 -62.68 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: 1.08 Total: -0.66 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 4.76 Total: -16.45 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -2.65 Total: -108.63 kcal Atomic # 14 Polarization: 61.28 SS G_CDS: 1.78 Total: 63.05 kcal Total: -67.66 4.97 -62.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260521733.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.578 kcal (2) G-P(sol) polarization free energy of solvation -67.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds