Wall clock time and date at job start Mon Mar 30 2020 02:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32344 * 120.45085 * 2 1 4 4 C 1.31783 * 120.82019 * 179.71633 * 3 2 1 5 5 N 1.31805 * 121.75051 * 0.57052 * 4 3 2 6 6 C 1.32318 * 120.82271 * 359.71754 * 5 4 3 7 7 C 1.38578 * 120.44372 * 180.27868 * 2 1 3 8 8 C 1.50703 * 120.80389 * 0.02562 * 7 2 1 9 9 H 1.09010 * 109.46882 * 0.02562 * 8 7 2 10 10 C 1.53001 * 109.47119 * 120.00095 * 8 7 2 11 11 C 1.50693 * 109.47355 * 240.00500 * 8 7 2 12 12 H 1.08000 * 120.00081 * 359.97438 * 11 8 7 13 13 C 1.37875 * 119.99959 * 179.97438 * 11 8 7 14 14 N 1.31521 * 120.00092 * 179.97438 * 13 11 8 15 15 Si 1.86802 * 120.00061 * 359.97438 * 13 11 8 16 16 H 1.48499 * 109.47029 * 90.00239 * 15 13 11 17 17 H 1.48502 * 109.46963 * 210.00037 * 15 13 11 18 18 H 1.48495 * 109.47112 * 330.00028 * 15 13 11 19 19 H 1.08999 * 109.47015 * 269.72667 * 1 2 3 20 20 H 1.09000 * 109.46646 * 29.71819 * 1 2 3 21 21 H 1.09000 * 109.47248 * 149.72537 * 1 2 3 22 22 H 1.08000 * 119.12124 * 180.26684 * 4 3 2 23 23 H 1.07996 * 120.45321 * 179.97438 * 6 5 4 24 24 H 1.08997 * 109.46885 * 300.00340 * 10 8 7 25 25 H 1.08998 * 109.46804 * 59.99949 * 10 8 7 26 26 H 1.08995 * 109.46802 * 180.02562 * 10 8 7 27 27 H 0.96998 * 120.00084 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1778 1.1409 0.0000 4 6 3.4956 1.1494 0.0056 5 7 4.1964 0.0331 0.0002 6 6 3.5945 -1.1452 -0.0055 7 6 2.2092 -1.1947 -0.0058 8 6 1.4843 -2.5159 -0.0128 9 1 0.4085 -2.3401 -0.0128 10 6 1.8718 -3.3036 -1.2659 11 6 1.8649 -3.3042 1.2138 12 1 2.5623 -2.8902 1.9269 13 6 1.3227 -4.5541 1.4256 14 7 1.6552 -5.2424 2.4959 15 14 0.1159 -5.2700 0.1925 16 1 0.8587 -6.0398 -0.8374 17 1 -0.8335 -6.1705 0.8946 18 1 -0.6369 -4.1687 -0.4599 19 1 -0.3633 -0.0049 1.0277 20 1 -0.3632 0.8925 -0.5095 21 1 -0.3634 -0.8875 -0.5181 22 1 4.0151 2.0962 0.0098 23 1 4.1747 -2.0561 -0.0103 24 1 1.5965 -2.7334 -2.1531 25 1 2.9475 -3.4794 -1.2663 26 1 1.3471 -4.2590 -1.2712 27 1 1.2735 -6.1215 2.6451 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260542663.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:34 Heat of formation + Delta-G solvation = 39.300172 kcal Electronic energy + Delta-G solvation = -11791.075410 eV Core-core repulsion = 9741.938722 eV Total energy + Delta-G solvation = -2049.136688 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.52086 -35.38935 -33.76127 -32.12797 -30.05834 -27.85118 -25.24971 -24.08919 -22.26718 -20.15924 -17.52050 -16.31576 -16.20034 -15.16545 -14.40542 -13.69410 -13.23472 -13.07900 -12.59823 -12.52618 -12.31677 -12.03207 -11.76363 -11.30944 -10.95129 -10.36617 -9.98224 -9.91493 -9.53439 -9.30446 -8.76960 -8.57517 -8.40688 -6.19820 -4.21685 1.57476 1.64526 3.18202 3.27366 3.31287 4.28227 4.34284 4.54902 4.76623 5.11475 5.15107 5.47827 5.69745 5.86015 5.92390 5.99692 6.21703 6.27064 6.43483 6.45607 6.55530 6.80948 7.04658 7.26488 7.55116 7.58627 8.35117 8.63491 8.81829 9.39594 10.92718 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049385 B = 0.012597 C = 0.011645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.837360 B = 2222.187605 C = 2403.899677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.154 3.846 3 N -0.527 5.527 4 C 0.261 3.739 5 N -0.530 5.530 6 C 0.151 3.849 7 C -0.125 4.125 8 C 0.043 3.957 9 H 0.047 0.953 10 C -0.146 4.146 11 C -0.515 4.515 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.894 5.894 15 Si 0.888 3.112 16 H -0.277 1.277 17 H -0.296 1.296 18 H -0.266 1.266 19 H 0.083 0.917 20 H 0.071 0.929 21 H 0.083 0.917 22 H 0.185 0.815 23 H 0.168 0.832 24 H 0.030 0.970 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.351 6.848 -6.496 9.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.008 3.992 3 N -0.242 5.242 4 C -0.027 4.027 5 N -0.244 5.244 6 C -0.014 4.014 7 C -0.129 4.129 8 C 0.023 3.977 9 H 0.065 0.935 10 C -0.204 4.204 11 C -0.553 4.553 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.531 5.531 15 Si 0.718 3.282 16 H -0.204 1.204 17 H -0.223 1.223 18 H -0.191 1.191 19 H 0.101 0.899 20 H 0.090 0.910 21 H 0.102 0.898 22 H 0.202 0.798 23 H 0.185 0.815 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.896 7.554 -6.388 9.933 hybrid contribution -0.903 -1.331 -0.463 1.673 sum -1.799 6.224 -6.851 9.429 Atomic orbital electron populations 1.20759 0.88584 1.03165 1.03606 1.21551 0.97344 0.88003 0.92275 1.68113 1.10416 1.30675 1.14993 1.24601 0.86967 0.96771 0.94393 1.68331 1.42214 0.99353 1.14485 1.23129 0.92302 0.95529 0.90464 1.21799 0.95964 0.97933 0.97166 1.18332 0.95888 0.88120 0.95315 0.93515 1.22190 1.01597 0.99380 0.97187 1.20862 1.28218 1.00942 1.05265 0.90706 1.24983 0.95974 0.96655 0.95244 1.69883 1.43706 1.12762 1.26774 0.86840 0.81211 0.79247 0.80875 1.20426 1.22331 1.19061 0.89880 0.90965 0.89808 0.79836 0.81514 0.95050 0.92592 0.93599 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 9.63 36.01 0.35 -1.29 15 2 C 0.15 2.90 6.82 -82.24 -0.56 2.34 15 3 N -0.53 -9.66 10.38 -10.80 -0.11 -9.77 15 4 C 0.26 4.50 12.29 -92.15 -1.13 3.37 15 5 N -0.53 -10.01 10.44 -14.58 -0.15 -10.16 15 6 C 0.15 2.99 10.07 -17.20 -0.17 2.82 15 7 C -0.12 -2.54 4.74 -104.35 -0.50 -3.04 15 8 C 0.04 0.95 1.91 -92.93 -0.18 0.77 15 9 H 0.05 1.01 4.68 -51.92 -0.24 0.77 15 10 C -0.15 -2.96 8.50 37.16 0.32 -2.64 15 11 C -0.52 -13.62 8.85 -34.44 -0.30 -13.93 15 12 H 0.07 2.19 7.86 -52.49 -0.41 1.78 15 13 C 0.07 2.03 5.45 -17.82 -0.10 1.93 15 14 N -0.89 -26.29 13.96 55.43 0.77 -25.51 15 15 Si 0.89 20.69 24.38 -169.99 -4.14 16.55 15 16 H -0.28 -6.31 6.87 56.52 0.39 -5.92 15 17 H -0.30 -6.97 7.11 56.52 0.40 -6.57 15 18 H -0.27 -5.80 6.53 56.52 0.37 -5.43 15 19 H 0.08 1.27 8.14 -51.93 -0.42 0.84 15 20 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.08 1.29 6.20 -51.93 -0.32 0.97 15 22 H 0.18 2.42 8.06 -52.49 -0.42 2.00 15 23 H 0.17 3.21 7.67 -52.49 -0.40 2.80 15 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 25 H 0.05 1.09 7.48 -51.93 -0.39 0.70 15 26 H 0.05 0.96 3.28 -51.93 -0.17 0.79 15 27 H 0.27 7.34 8.31 -40.82 -0.34 7.01 15 LS Contribution 225.87 15.07 3.40 3.40 Total: -1.00 -29.42 225.87 -5.32 -34.74 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -2.81 Total: 0.43 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.28 Total: -9.67 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.51 Total: -45.44 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.14 Total: 16.55 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -29.42 -5.32 -34.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260542663.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.035 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds