Wall clock time and date at job start Mon Mar 30 2020 02:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32344 * 120.45085 * 2 1 4 4 C 1.31783 * 120.82019 * 179.71633 * 3 2 1 5 5 N 1.31805 * 121.75051 * 0.57052 * 4 3 2 6 6 C 1.32318 * 120.82271 * 359.71754 * 5 4 3 7 7 C 1.38578 * 120.44372 * 180.27868 * 2 1 3 8 8 C 1.50703 * 120.80389 * 0.02562 * 7 2 1 9 9 H 1.09010 * 109.46882 * 0.02562 * 8 7 2 10 10 C 1.53001 * 109.47119 * 120.00095 * 8 7 2 11 11 C 1.50693 * 109.47355 * 240.00500 * 8 7 2 12 12 H 1.08000 * 120.00081 * 359.97438 * 11 8 7 13 13 C 1.37875 * 119.99959 * 179.97438 * 11 8 7 14 14 N 1.31521 * 120.00092 * 179.97438 * 13 11 8 15 15 Si 1.86802 * 120.00061 * 359.97438 * 13 11 8 16 16 H 1.48499 * 109.47029 * 90.00239 * 15 13 11 17 17 H 1.48502 * 109.46963 * 210.00037 * 15 13 11 18 18 H 1.48495 * 109.47112 * 330.00028 * 15 13 11 19 19 H 1.08999 * 109.47015 * 269.72667 * 1 2 3 20 20 H 1.09000 * 109.46646 * 29.71819 * 1 2 3 21 21 H 1.09000 * 109.47248 * 149.72537 * 1 2 3 22 22 H 1.08000 * 119.12124 * 180.26684 * 4 3 2 23 23 H 1.07996 * 120.45321 * 179.97438 * 6 5 4 24 24 H 1.08997 * 109.46885 * 300.00340 * 10 8 7 25 25 H 1.08998 * 109.46804 * 59.99949 * 10 8 7 26 26 H 1.08995 * 109.46802 * 180.02562 * 10 8 7 27 27 H 0.96998 * 120.00084 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1778 1.1409 0.0000 4 6 3.4956 1.1494 0.0056 5 7 4.1964 0.0331 0.0002 6 6 3.5945 -1.1452 -0.0055 7 6 2.2092 -1.1947 -0.0058 8 6 1.4843 -2.5159 -0.0128 9 1 0.4085 -2.3401 -0.0128 10 6 1.8718 -3.3036 -1.2659 11 6 1.8649 -3.3042 1.2138 12 1 2.5623 -2.8902 1.9269 13 6 1.3227 -4.5541 1.4256 14 7 1.6552 -5.2424 2.4959 15 14 0.1159 -5.2700 0.1925 16 1 0.8587 -6.0398 -0.8374 17 1 -0.8335 -6.1705 0.8946 18 1 -0.6369 -4.1687 -0.4599 19 1 -0.3633 -0.0049 1.0277 20 1 -0.3632 0.8925 -0.5095 21 1 -0.3634 -0.8875 -0.5181 22 1 4.0151 2.0962 0.0098 23 1 4.1747 -2.0561 -0.0103 24 1 1.5965 -2.7334 -2.1531 25 1 2.9475 -3.4794 -1.2663 26 1 1.3471 -4.2590 -1.2712 27 1 1.2735 -6.1215 2.6451 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260542663.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:34 Heat of formation + Delta-G solvation = 20.386971 kcal Electronic energy + Delta-G solvation = -11791.895548 eV Core-core repulsion = 9741.938722 eV Total energy + Delta-G solvation = -2049.956826 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.97924 -37.07551 -35.21459 -34.06065 -31.62896 -29.23436 -27.13063 -25.68223 -23.70047 -21.87236 -19.21481 -18.03755 -17.64880 -16.99300 -15.88324 -15.39678 -14.93009 -14.59110 -14.16313 -13.92781 -13.81000 -13.60492 -13.17341 -13.04528 -12.69128 -12.10007 -11.66381 -11.39137 -11.28468 -11.09668 -10.76295 -10.09346 -9.97904 -8.29230 -6.35380 0.11743 0.14866 1.35698 1.40303 1.51091 2.33834 2.87983 3.06794 3.23028 3.37526 3.72734 3.96740 4.14351 4.46625 4.63822 4.68477 4.73058 4.79922 4.91193 5.00979 5.07820 5.21134 5.54636 5.62937 5.65326 6.08858 6.27831 6.69879 7.19260 7.29619 8.87234 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049385 B = 0.012597 C = 0.011645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.837360 B = 2222.187605 C = 2403.899677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.153 3.847 3 N -0.532 5.532 4 C 0.266 3.734 5 N -0.541 5.541 6 C 0.142 3.858 7 C -0.150 4.150 8 C 0.048 3.952 9 H 0.057 0.943 10 C -0.145 4.145 11 C -0.512 4.512 12 H 0.028 0.972 13 C 0.016 3.984 14 N -0.948 5.948 15 Si 0.949 3.051 16 H -0.266 1.266 17 H -0.302 1.302 18 H -0.235 1.235 19 H 0.086 0.914 20 H 0.096 0.904 21 H 0.089 0.911 22 H 0.225 0.775 23 H 0.161 0.839 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.040 0.960 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.479 8.099 -8.374 11.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.008 3.992 3 N -0.247 5.247 4 C -0.022 4.022 5 N -0.256 5.256 6 C -0.023 4.023 7 C -0.154 4.154 8 C 0.028 3.972 9 H 0.075 0.925 10 C -0.202 4.202 11 C -0.550 4.550 12 H 0.047 0.953 13 C -0.182 4.182 14 N -0.588 5.588 15 Si 0.775 3.225 16 H -0.193 1.193 17 H -0.230 1.230 18 H -0.159 1.159 19 H 0.105 0.895 20 H 0.114 0.886 21 H 0.107 0.893 22 H 0.241 0.759 23 H 0.179 0.821 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.015 8.831 -8.286 12.276 hybrid contribution -0.449 -1.589 0.190 1.663 sum -2.464 7.242 -8.095 11.138 Atomic orbital electron populations 1.20860 0.86390 1.04638 1.04205 1.22030 0.98916 0.87549 0.90744 1.68259 1.10821 1.30166 1.15415 1.25462 0.86994 0.97688 0.92067 1.68392 1.42455 0.99464 1.15252 1.23132 0.92484 0.96016 0.90629 1.21711 0.96130 0.97930 0.99606 1.18213 0.96534 0.88553 0.93929 0.92500 1.22124 1.01573 0.99118 0.97393 1.21074 1.26632 1.01280 1.06046 0.95344 1.25863 0.98082 0.97120 0.97120 1.70046 1.45905 1.13442 1.29417 0.85847 0.78900 0.79173 0.78549 1.19257 1.23003 1.15871 0.89545 0.88562 0.89277 0.75854 0.82137 0.91971 0.92739 0.94171 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.95 9.63 71.24 0.69 -2.27 15 2 C 0.15 5.45 6.82 42.56 0.29 5.74 15 3 N -0.53 -18.09 10.38 -188.08 -1.95 -20.04 15 4 C 0.27 8.48 12.29 180.88 2.22 10.71 15 5 N -0.54 -19.75 10.44 -200.04 -2.09 -21.84 15 6 C 0.14 5.59 10.07 84.71 0.85 6.44 15 7 C -0.15 -5.94 4.74 -19.69 -0.09 -6.03 15 8 C 0.05 2.02 1.91 -12.29 -0.02 2.00 15 9 H 0.06 2.32 4.68 -2.38 -0.01 2.30 15 10 C -0.15 -5.51 8.50 71.98 0.61 -4.90 15 11 C -0.51 -27.55 8.85 25.60 0.23 -27.32 15 12 H 0.03 1.74 7.86 -2.91 -0.02 1.72 15 13 C 0.02 0.86 5.45 84.65 0.46 1.32 15 14 N -0.95 -57.47 13.96 21.45 0.30 -57.17 15 15 Si 0.95 41.78 24.38 68.60 1.67 43.45 15 16 H -0.27 -11.21 6.87 99.48 0.68 -10.52 15 17 H -0.30 -13.52 7.11 99.48 0.71 -12.81 15 18 H -0.24 -9.15 6.53 99.48 0.65 -8.50 15 19 H 0.09 2.42 8.14 -2.39 -0.02 2.40 15 20 H 0.10 2.26 8.14 -2.39 -0.02 2.24 15 21 H 0.09 2.43 6.20 -2.39 -0.01 2.42 15 22 H 0.23 5.07 8.06 -2.91 -0.02 5.05 15 23 H 0.16 6.33 7.67 -2.91 -0.02 6.31 15 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 15 25 H 0.05 2.05 7.48 -2.39 -0.02 2.03 15 26 H 0.04 1.56 3.28 -2.39 -0.01 1.56 15 27 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 Total: -1.00 -63.64 225.87 4.26 -59.38 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.09 Total: 10.54 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 5.23 Total: -14.31 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -3.74 Total: -99.06 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.67 Total: 43.45 kcal Total: -63.64 4.26 -59.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260542663.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.771 kcal (2) G-P(sol) polarization free energy of solvation -63.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds