Wall clock time and date at job start Mon Mar 30 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38608 * 120.07187 * 2 1 4 4 C 1.38885 * 117.96474 * 179.75240 * 3 2 1 5 5 C 1.38603 * 117.97125 * 0.51677 * 4 3 2 6 6 C 1.50708 * 120.08015 * 179.74288 * 5 4 3 7 7 H 1.08998 * 109.47147 * 154.72299 * 6 5 4 8 8 C 1.53004 * 109.46738 * 34.72789 * 6 5 4 9 9 C 1.50695 * 109.46910 * 274.72631 * 6 5 4 10 10 H 1.08001 * 120.00278 * 5.71139 * 9 6 5 11 11 C 1.37875 * 119.99931 * 185.70967 * 9 6 5 12 12 N 1.31517 * 120.00107 * 197.83412 * 11 9 6 13 13 Si 1.86804 * 120.00070 * 18.10568 * 11 9 6 14 14 H 1.48499 * 109.47152 * 179.72701 * 13 11 9 15 15 H 1.48499 * 109.47095 * 299.73048 * 13 11 9 16 16 H 1.48507 * 109.46918 * 59.72555 * 13 11 9 17 17 N 1.31935 * 119.84385 * 359.46624 * 5 4 3 18 18 N 1.28343 * 122.18582 * 0.28060 * 17 5 4 19 19 H 1.09003 * 109.47610 * 269.97949 * 1 2 3 20 20 H 1.08994 * 109.47413 * 29.98631 * 1 2 3 21 21 H 1.09008 * 109.46560 * 149.98325 * 1 2 3 22 22 H 1.07999 * 121.02276 * 359.97438 * 3 2 1 23 23 H 1.08003 * 121.01708 * 180.26626 * 4 3 2 24 24 H 1.09004 * 109.46948 * 294.63737 * 8 6 5 25 25 H 1.08998 * 109.47522 * 54.63766 * 8 6 5 26 26 H 1.09000 * 109.46496 * 174.64018 * 8 6 5 27 27 H 0.96998 * 119.99908 * 355.22266 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.1995 0.0000 4 6 3.5894 1.1485 0.0053 5 6 4.1941 -0.0987 -0.0008 6 6 5.6971 -0.2095 -0.0013 7 1 5.9911 -1.1650 0.4329 8 6 6.2927 0.9314 0.8261 9 6 6.2066 -0.1227 -1.4168 10 1 5.5229 0.0923 -2.2247 11 6 7.5458 -0.3178 -1.6806 12 7 8.0578 0.0912 -2.8208 13 14 8.6313 -1.1699 -0.4216 14 1 10.0180 -1.2617 -0.9448 15 1 8.6296 -0.3901 0.8422 16 1 8.1090 -2.5355 -0.1612 17 7 3.4508 -1.1887 -0.0006 18 7 2.1682 -1.1416 -0.0003 19 1 -0.3634 -0.0004 1.0277 20 1 -0.3634 0.8900 -0.5136 21 1 -0.3633 -0.8899 -0.5141 22 1 1.6795 2.1450 -0.0004 23 1 4.1796 2.0530 0.0099 24 1 6.0791 1.8831 0.3395 25 1 5.8518 0.9260 1.8230 26 1 7.3716 0.7979 0.9052 27 1 7.4813 0.4671 -3.5043 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260586651.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:30 Heat of formation + Delta-G solvation = 17.980618 kcal Electronic energy + Delta-G solvation = -11553.282386 eV Core-core repulsion = 9503.221213 eV Total energy + Delta-G solvation = -2050.061173 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.96791 -37.08439 -34.70109 -34.24717 -32.13698 -28.92148 -26.85002 -25.35335 -24.23123 -21.87798 -19.67253 -18.38042 -17.29502 -16.21387 -16.16883 -15.53622 -15.08480 -14.59970 -14.25635 -13.79270 -13.66612 -13.29468 -13.12005 -13.03562 -12.41872 -11.92086 -11.69942 -11.48102 -11.15630 -11.04114 -10.56623 -10.47404 -10.25510 -8.79155 -6.42629 -0.06686 0.09874 1.45603 1.56414 1.74678 2.46216 2.64668 3.02459 3.16529 3.62746 3.78051 3.85934 4.15961 4.27223 4.59645 4.67175 4.70968 4.77835 4.85029 4.95352 5.11834 5.16791 5.30850 5.47593 5.63558 5.87156 5.97470 6.47520 7.33461 7.87933 8.58850 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.063673 B = 0.010034 C = 0.009986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.641431 B = 2789.928161 C = 2803.283674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.037 3.963 3 C -0.109 4.109 4 C -0.124 4.124 5 C 0.091 3.909 6 C 0.057 3.943 7 H 0.035 0.965 8 C -0.143 4.143 9 C -0.592 4.592 10 H 0.009 0.991 11 C -0.012 4.012 12 N -0.931 5.931 13 Si 1.081 2.919 14 H -0.286 1.286 15 H -0.229 1.229 16 H -0.274 1.274 17 N -0.295 5.295 18 N -0.286 5.286 19 H 0.098 0.902 20 H 0.106 0.894 21 H 0.073 0.927 22 H 0.194 0.806 23 H 0.164 0.836 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.245 4.931 9.189 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.137 4.137 4 C -0.152 4.152 5 C -0.054 4.054 6 C 0.036 3.964 7 H 0.053 0.947 8 C -0.201 4.201 9 C -0.630 4.630 10 H 0.027 0.973 11 C -0.210 4.210 12 N -0.567 5.567 13 Si 0.902 3.098 14 H -0.212 1.212 15 H -0.153 1.153 16 H -0.199 1.199 17 N -0.134 5.134 18 N -0.127 5.127 19 H 0.117 0.883 20 H 0.124 0.876 21 H 0.092 0.908 22 H 0.211 0.789 23 H 0.181 0.819 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.778 2.805 9.489 13.911 hybrid contribution -1.355 1.779 -1.207 2.542 sum -11.133 4.584 8.282 14.613 Atomic orbital electron populations 1.20742 0.84395 1.04871 1.04708 1.23590 1.01005 0.90365 0.96012 1.22749 0.93654 1.01116 0.96210 1.22605 0.96337 0.99277 0.97023 1.23239 0.99291 0.90989 0.91888 1.18035 0.85443 0.96852 0.96077 0.94665 1.22175 1.01307 0.98556 0.98015 1.21831 0.95278 1.53969 0.91909 0.97265 1.27195 0.98091 0.94138 1.01604 1.71005 1.37640 1.39533 1.08500 0.83639 0.74168 0.77013 0.74987 1.21226 1.15321 1.19938 1.72824 0.99860 1.28869 1.11895 1.72784 1.01655 1.27293 1.10994 0.88336 0.87581 0.90782 0.78909 0.81890 0.92455 0.92357 0.92145 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 10.20 71.23 0.73 -0.95 15 2 C 0.04 1.12 6.86 42.63 0.29 1.42 15 3 C -0.11 -3.01 9.88 22.51 0.22 -2.79 15 4 C -0.12 -4.37 9.27 22.51 0.21 -4.17 15 5 C 0.09 4.08 5.81 42.63 0.25 4.33 15 6 C 0.06 2.73 2.22 -12.28 -0.03 2.70 15 7 H 0.04 1.75 6.78 -2.39 -0.02 1.73 15 8 C -0.14 -5.65 8.14 71.98 0.59 -5.06 15 9 C -0.59 -34.14 8.80 25.60 0.23 -33.91 15 10 H 0.01 0.58 7.99 -2.91 -0.02 0.56 15 11 C -0.01 -0.68 5.34 84.65 0.45 -0.23 15 12 N -0.93 -58.26 13.70 21.45 0.29 -57.97 15 13 Si 1.08 49.64 26.45 68.60 1.81 51.45 15 14 H -0.29 -13.16 7.11 99.48 0.71 -12.46 15 15 H -0.23 -8.93 5.52 99.48 0.55 -8.39 15 16 H -0.27 -12.24 7.11 99.48 0.71 -11.54 15 17 N -0.29 -13.96 11.43 -47.62 -0.54 -14.50 15 18 N -0.29 -11.76 11.43 -47.63 -0.54 -12.31 15 19 H 0.10 1.47 8.14 -2.39 -0.02 1.45 15 20 H 0.11 1.33 8.09 -2.39 -0.02 1.31 15 21 H 0.07 1.47 8.14 -2.38 -0.02 1.45 15 22 H 0.19 3.18 8.06 -2.91 -0.02 3.16 15 23 H 0.16 5.08 6.54 -2.91 -0.02 5.06 15 24 H 0.06 2.16 6.85 -2.38 -0.02 2.15 15 25 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 26 H 0.06 2.40 4.85 -2.39 -0.01 2.39 15 27 H 0.25 16.03 8.73 -92.71 -0.81 15.22 15 Total: -1.00 -72.88 231.57 4.92 -67.96 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 0.97 Total: 4.02 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 2.93 Total: -38.66 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -0.79 Total: -84.78 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.81 Total: 51.45 kcal Total: -72.88 4.92 -67.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260586651.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.941 kcal (2) G-P(sol) polarization free energy of solvation -72.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds