Wall clock time and date at job start Mon Mar 30 2020 02:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47356 * 2 1 4 4 C 1.50701 * 109.46862 * 120.00040 * 2 1 3 5 5 C 1.39078 * 120.66407 * 120.00060 * 4 2 1 6 6 N 1.31897 * 119.26175 * 180.02562 * 5 4 2 7 7 C 1.33458 * 120.68527 * 0.02562 * 6 5 4 8 8 C 1.41592 * 119.27917 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00403 * 359.97438 * 8 7 6 10 10 C 1.40065 * 119.99615 * 179.97438 * 8 7 6 11 11 N 1.30694 * 119.99914 * 359.72707 * 10 8 7 12 12 Si 1.86800 * 120.00256 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47090 * 89.99796 * 12 10 8 14 14 H 1.48495 * 109.47520 * 210.00138 * 12 10 8 15 15 H 1.48507 * 109.46786 * 330.00096 * 12 10 8 16 16 N 1.33449 * 121.43252 * 0.25480 * 7 6 5 17 17 C 1.31899 * 120.68575 * 359.47401 * 16 7 6 18 18 H 1.09005 * 109.47147 * 59.99939 * 1 2 3 19 19 H 1.08995 * 109.47358 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47125 * 300.00232 * 1 2 3 21 21 H 1.08998 * 109.47125 * 239.99768 * 2 1 3 22 22 H 1.08999 * 109.47106 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.46904 * 299.99881 * 3 2 1 24 24 H 1.08998 * 109.47193 * 59.99809 * 3 2 1 25 25 H 1.08005 * 120.36789 * 0.02562 * 5 4 2 26 26 H 0.97000 * 119.99570 * 180.02562 * 11 10 8 27 27 H 1.08010 * 120.36720 * 180.23293 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.8326 -1.8424 1.1190 6 7 3.2564 -2.4427 2.2142 7 6 2.9244 -1.9750 3.4193 8 6 3.3955 -2.6432 4.5753 9 1 4.0160 -3.5215 4.4762 10 6 3.0566 -2.1650 5.8474 11 7 2.3100 -1.0990 5.9673 12 14 3.6786 -3.0460 7.3727 13 1 4.9866 -2.4711 7.7775 14 1 2.7000 -2.8754 8.4766 15 1 3.8436 -4.4918 7.0765 16 7 2.1536 -0.8946 3.5583 17 6 1.7035 -0.2482 2.5003 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 1.8933 -0.5139 -0.8899 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9562 -0.8900 24 1 1.6767 1.9563 0.8899 25 1 3.1040 -2.2255 0.1463 26 1 2.0757 -0.7676 6.8483 27 1 1.0830 0.6280 2.6188 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260588810.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:54 Heat of formation + Delta-G solvation = 25.341437 kcal Electronic energy + Delta-G solvation = -11557.206247 eV Core-core repulsion = 9507.464263 eV Total energy + Delta-G solvation = -2049.741984 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.02073 -35.25937 -33.43489 -31.64540 -29.45988 -26.65086 -26.07108 -22.82932 -22.22517 -19.50401 -17.78938 -16.13840 -15.02943 -14.68331 -14.00822 -13.47433 -13.21861 -12.66387 -12.34713 -12.06951 -11.76021 -11.33416 -11.26084 -11.22481 -10.68225 -10.65692 -10.36119 -10.21665 -9.41333 -9.04098 -8.90159 -7.78779 -7.25488 -6.50006 -4.66709 2.61983 3.00476 3.07035 3.10711 3.14389 3.90815 4.67159 5.45617 5.53013 5.69672 5.83634 5.95797 5.99665 6.04944 6.17251 6.29556 6.30877 6.44347 6.59936 6.68297 6.75844 6.98389 7.13159 7.43821 7.71703 8.20799 8.55345 8.62835 9.14800 10.16607 10.32611 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.074663 B = 0.009639 C = 0.009049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.926020 B = 2904.286063 C = 3093.454776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.021 4.021 3 C -0.139 4.139 4 C -0.336 4.336 5 C 0.163 3.837 6 N -0.596 5.596 7 C 0.387 3.613 8 C -0.403 4.403 9 H 0.091 0.909 10 C 0.066 3.934 11 N -0.714 5.714 12 Si 0.918 3.082 13 H -0.268 1.268 14 H -0.275 1.275 15 H -0.260 1.260 16 N -0.507 5.507 17 C 0.164 3.836 18 H 0.043 0.957 19 H 0.049 0.951 20 H 0.051 0.949 21 H 0.059 0.941 22 H 0.049 0.951 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.125 0.875 26 H 0.274 0.726 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 2.545 -4.537 5.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.041 4.041 3 C -0.196 4.196 4 C -0.346 4.346 5 C -0.009 4.009 6 N -0.315 5.315 7 C 0.150 3.850 8 C -0.438 4.438 9 H 0.109 0.891 10 C -0.160 4.160 11 N -0.336 5.336 12 Si 0.742 3.258 13 H -0.193 1.193 14 H -0.200 1.200 15 H -0.183 1.183 16 N -0.224 5.224 17 C -0.011 4.011 18 H 0.062 0.938 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.143 0.857 26 H 0.085 0.915 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.536 2.161 -3.440 4.344 hybrid contribution -0.138 0.212 -0.178 0.309 sum -1.674 2.373 -3.618 4.640 Atomic orbital electron populations 1.21837 0.96136 1.01134 1.00521 1.19515 0.94317 0.94710 0.95542 1.21836 1.00774 0.96500 1.00521 1.20712 1.13527 1.04527 0.95798 1.22420 0.91254 0.90689 0.96523 1.68669 1.29055 1.34726 0.99071 1.19992 0.87852 0.87459 0.89719 1.19360 1.26234 1.10269 0.87953 0.89059 1.26104 0.94151 0.94789 1.00975 1.70144 1.22294 1.16286 1.24851 0.86156 0.79226 0.80729 0.79727 1.19281 1.20035 1.18344 1.69381 1.13661 1.09423 1.29907 1.22689 0.93720 0.96290 0.88374 0.93807 0.93201 0.92963 0.92249 0.93198 0.93802 0.92969 0.85735 0.91451 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.01 37.16 0.33 -1.78 15 2 C -0.02 -0.35 3.12 -91.77 -0.29 -0.64 15 3 C -0.14 -2.12 9.02 37.16 0.33 -1.78 15 4 C -0.34 -7.28 4.82 -104.00 -0.50 -7.78 15 5 C 0.16 3.80 10.95 -17.21 -0.19 3.61 15 6 N -0.60 -16.21 10.36 -12.64 -0.13 -16.34 15 7 C 0.39 11.20 7.37 -158.31 -1.17 10.03 15 8 C -0.40 -11.31 9.38 -37.62 -0.35 -11.66 15 9 H 0.09 2.46 7.85 -52.49 -0.41 2.05 15 10 C 0.07 1.71 5.50 -17.35 -0.10 1.62 15 11 N -0.71 -19.11 11.43 55.55 0.63 -18.47 15 12 Si 0.92 18.81 29.56 -169.99 -5.02 13.78 15 13 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 14 H -0.28 -5.46 7.11 56.52 0.40 -5.05 15 15 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 16 N -0.51 -14.29 7.88 -12.64 -0.10 -14.38 15 17 C 0.16 3.95 10.03 -17.21 -0.17 3.77 15 18 H 0.04 0.56 8.14 -51.93 -0.42 0.14 15 19 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 20 H 0.05 0.81 7.47 -51.93 -0.39 0.42 15 21 H 0.06 0.93 7.94 -51.93 -0.41 0.52 15 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 15 24 H 0.05 0.81 7.48 -51.93 -0.39 0.42 15 25 H 0.13 2.46 8.01 -52.48 -0.42 2.04 15 26 H 0.27 6.59 8.29 -40.82 -0.34 6.25 15 27 H 0.12 2.66 7.27 -52.48 -0.38 2.27 15 LS Contribution 236.59 15.07 3.57 3.57 Total: -1.00 -30.00 236.59 -6.37 -36.38 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.23 Total: 0.08 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.09 Total: -4.61 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.40 Total: -49.20 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.00 -6.37 -36.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260588810.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.720 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds