Wall clock time and date at job start Mon Mar 30 2020 02:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47356 * 2 1 4 4 C 1.50701 * 109.46862 * 120.00040 * 2 1 3 5 5 C 1.39078 * 120.66407 * 120.00060 * 4 2 1 6 6 N 1.31897 * 119.26175 * 180.02562 * 5 4 2 7 7 C 1.33458 * 120.68527 * 0.02562 * 6 5 4 8 8 C 1.41592 * 119.27917 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00403 * 359.97438 * 8 7 6 10 10 C 1.40065 * 119.99615 * 179.97438 * 8 7 6 11 11 N 1.30694 * 119.99914 * 359.72707 * 10 8 7 12 12 Si 1.86800 * 120.00256 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47090 * 89.99796 * 12 10 8 14 14 H 1.48495 * 109.47520 * 210.00138 * 12 10 8 15 15 H 1.48507 * 109.46786 * 330.00096 * 12 10 8 16 16 N 1.33449 * 121.43252 * 0.25480 * 7 6 5 17 17 C 1.31899 * 120.68575 * 359.47401 * 16 7 6 18 18 H 1.09005 * 109.47147 * 59.99939 * 1 2 3 19 19 H 1.08995 * 109.47358 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47125 * 300.00232 * 1 2 3 21 21 H 1.08998 * 109.47125 * 239.99768 * 2 1 3 22 22 H 1.08999 * 109.47106 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.46904 * 299.99881 * 3 2 1 24 24 H 1.08998 * 109.47193 * 59.99809 * 3 2 1 25 25 H 1.08005 * 120.36789 * 0.02562 * 5 4 2 26 26 H 0.97000 * 119.99570 * 180.02562 * 11 10 8 27 27 H 1.08010 * 120.36720 * 180.23293 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.8326 -1.8424 1.1190 6 7 3.2564 -2.4427 2.2142 7 6 2.9244 -1.9750 3.4193 8 6 3.3955 -2.6432 4.5753 9 1 4.0160 -3.5215 4.4762 10 6 3.0566 -2.1650 5.8474 11 7 2.3100 -1.0990 5.9673 12 14 3.6786 -3.0460 7.3727 13 1 4.9866 -2.4711 7.7775 14 1 2.7000 -2.8754 8.4766 15 1 3.8436 -4.4918 7.0765 16 7 2.1536 -0.8946 3.5583 17 6 1.7035 -0.2482 2.5003 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 1.8933 -0.5139 -0.8899 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9562 -0.8900 24 1 1.6767 1.9563 0.8899 25 1 3.1040 -2.2255 0.1463 26 1 2.0757 -0.7676 6.8483 27 1 1.0830 0.6280 2.6188 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260588810.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:53 Heat of formation + Delta-G solvation = 6.757600 kcal Electronic energy + Delta-G solvation = -11558.012102 eV Core-core repulsion = 9507.464263 eV Total energy + Delta-G solvation = -2050.547840 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.93223 -36.83120 -35.28939 -33.62879 -31.29500 -27.96440 -27.85967 -24.72610 -24.04915 -21.04310 -19.73512 -18.02425 -16.95916 -16.32789 -15.58164 -15.02860 -14.82052 -14.46758 -13.90669 -13.79092 -13.05598 -12.98330 -12.84112 -12.82246 -12.56992 -11.97570 -11.94098 -11.63609 -11.26658 -11.05071 -10.71855 -9.66806 -9.23076 -8.41409 -6.69804 0.74419 1.07078 1.39687 1.50939 1.56071 2.20978 2.76139 3.90691 4.04273 4.06027 4.14781 4.20746 4.49391 4.51084 4.85237 4.90243 4.92389 5.08709 5.10682 5.23885 5.27739 5.35940 5.51979 5.71851 5.88190 6.16914 6.55539 6.65497 7.20398 8.24032 8.39249 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.074663 B = 0.009639 C = 0.009049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.926020 B = 2904.286063 C = 3093.454776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.022 4.022 3 C -0.135 4.135 4 C -0.313 4.313 5 C 0.145 3.855 6 N -0.624 5.624 7 C 0.357 3.643 8 C -0.446 4.446 9 H 0.086 0.914 10 C 0.024 3.976 11 N -0.751 5.751 12 Si 1.000 3.000 13 H -0.260 1.260 14 H -0.261 1.261 15 H -0.257 1.257 16 N -0.542 5.542 17 C 0.145 3.855 18 H 0.076 0.924 19 H 0.040 0.960 20 H 0.044 0.956 21 H 0.079 0.921 22 H 0.040 0.960 23 H 0.076 0.924 24 H 0.044 0.956 25 H 0.162 0.838 26 H 0.283 0.717 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 3.044 -5.411 6.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.041 4.041 3 C -0.193 4.193 4 C -0.322 4.322 5 C -0.025 4.025 6 N -0.344 5.344 7 C 0.118 3.882 8 C -0.481 4.481 9 H 0.104 0.896 10 C -0.199 4.199 11 N -0.374 5.374 12 Si 0.819 3.181 13 H -0.184 1.184 14 H -0.186 1.186 15 H -0.181 1.181 16 N -0.259 5.259 17 C -0.027 4.027 18 H 0.095 0.905 19 H 0.059 0.941 20 H 0.063 0.937 21 H 0.097 0.903 22 H 0.059 0.941 23 H 0.095 0.905 24 H 0.063 0.937 25 H 0.179 0.821 26 H 0.094 0.906 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.910 2.691 -4.372 5.478 hybrid contribution -0.083 0.137 -0.118 0.199 sum -1.993 2.827 -4.490 5.668 Atomic orbital electron populations 1.21793 0.94569 1.01022 1.01870 1.19656 0.95543 0.95381 0.93547 1.21793 1.00218 0.95373 1.01869 1.21213 1.10760 1.03214 0.96985 1.23128 0.91183 0.91168 0.97004 1.68674 1.30206 1.35846 0.99662 1.20371 0.88801 0.88303 0.90688 1.19668 1.27950 1.11098 0.89407 0.89580 1.27057 0.93801 0.95371 1.03657 1.70209 1.23265 1.17684 1.26241 0.84954 0.78913 0.79146 0.75089 1.18421 1.18551 1.18098 1.69318 1.14689 1.10014 1.31903 1.23159 0.93923 0.96775 0.88879 0.90470 0.94088 0.93666 0.90304 0.94083 0.90466 0.93672 0.82127 0.90588 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.01 71.98 0.65 -3.03 15 2 C -0.02 -0.66 3.12 -11.54 -0.04 -0.69 15 3 C -0.14 -3.67 9.02 71.98 0.65 -3.03 15 4 C -0.31 -13.18 4.82 -19.46 -0.09 -13.27 15 5 C 0.15 6.67 10.95 84.88 0.93 7.60 15 6 N -0.62 -34.56 10.36 -193.90 -2.01 -36.57 15 7 C 0.36 21.33 7.37 135.15 1.00 22.33 15 8 C -0.45 -25.92 9.38 23.54 0.22 -25.70 15 9 H 0.09 4.85 7.85 -2.91 -0.02 4.83 15 10 C 0.02 1.26 5.50 85.31 0.47 1.73 15 11 N -0.75 -41.12 11.43 21.84 0.25 -40.87 15 12 Si 1.00 38.96 29.56 68.60 2.03 40.99 15 13 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 14 H -0.26 -9.48 7.11 99.48 0.71 -8.77 15 15 H -0.26 -9.79 7.11 99.48 0.71 -9.08 15 16 N -0.54 -31.30 7.88 -193.90 -1.53 -32.83 15 17 C 0.15 7.00 10.03 84.88 0.85 7.85 15 18 H 0.08 1.62 8.14 -2.38 -0.02 1.60 15 19 H 0.04 1.18 8.14 -2.39 -0.02 1.16 15 20 H 0.04 1.28 7.47 -2.39 -0.02 1.27 15 21 H 0.08 2.15 7.94 -2.39 -0.02 2.13 15 22 H 0.04 1.18 8.14 -2.39 -0.02 1.16 15 23 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 24 H 0.04 1.28 7.48 -2.39 -0.02 1.26 15 25 H 0.16 6.00 8.01 -2.91 -0.02 5.98 15 26 H 0.28 13.79 8.29 -92.71 -0.77 13.03 15 27 H 0.14 6.12 7.27 -2.91 -0.02 6.10 15 Total: -1.00 -66.75 236.59 4.53 -62.23 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.15 Total: 13.26 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 4.63 Total: -6.21 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -3.29 Total: -110.26 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -66.75 4.53 -62.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260588810.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.984 kcal (2) G-P(sol) polarization free energy of solvation -66.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds