Wall clock time and date at job start Mon Mar 30 2020 02:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31815 * 119.11867 * 2 1 4 4 C 1.32322 * 120.81140 * 180.02562 * 3 2 1 5 5 C 1.38622 * 119.10952 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.80207 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47455 * 265.01820 * 6 5 4 8 8 H 1.08007 * 119.99451 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00662 * 180.02562 * 7 6 5 10 10 N 1.31524 * 119.99726 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00415 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47398 * 89.99864 * 11 9 7 13 13 H 1.48503 * 109.47350 * 209.99509 * 11 9 7 14 14 H 1.48496 * 109.47232 * 329.99812 * 11 9 7 15 15 C 1.38572 * 118.39630 * 359.97438 * 5 4 3 16 16 C 1.50701 * 120.44966 * 179.97438 * 15 5 4 17 17 N 1.31781 * 119.12461 * 179.97438 * 2 1 3 18 18 H 1.09001 * 109.47254 * 269.99889 * 1 2 3 19 19 H 1.09002 * 109.47745 * 30.00259 * 1 2 3 20 20 H 1.09000 * 109.47071 * 150.00226 * 1 2 3 21 21 H 1.08006 * 120.44227 * 179.97438 * 4 3 2 22 22 H 1.09002 * 109.47412 * 25.01994 * 6 5 4 23 23 H 1.09002 * 109.47034 * 145.01672 * 6 5 4 24 24 H 0.96999 * 119.99677 * 180.02562 * 10 9 7 25 25 H 1.08994 * 109.47420 * 270.02791 * 16 15 5 26 26 H 1.09004 * 109.46690 * 30.02060 * 16 15 5 27 27 H 1.09000 * 109.47294 * 150.02039 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1484 1.1516 0.0000 4 6 3.4710 1.1906 -0.0005 5 6 4.1809 0.0000 -0.0016 6 6 5.6878 0.0000 -0.0028 7 6 6.1891 -0.1228 -1.4186 8 1 5.4865 -0.1933 -2.2359 9 6 7.5443 -0.1451 -1.6707 10 7 8.3998 -0.0587 -0.6754 11 14 8.1656 -0.2965 -3.4258 12 1 8.3309 1.0583 -4.0111 13 1 9.4735 -0.9999 -3.4290 14 1 7.1866 -1.0683 -4.2326 15 6 3.4713 -1.1903 -0.0015 16 6 4.1961 -2.5115 -0.0033 17 7 2.1483 -1.1512 0.0005 18 1 -0.3634 0.0000 1.0277 19 1 -0.3635 0.8899 -0.5139 20 1 -0.3633 -0.8900 -0.5138 21 1 3.9905 2.1376 -0.0009 22 1 6.0515 0.9310 0.4320 23 1 6.0516 -0.8423 0.5858 24 1 9.3533 -0.0740 -0.8528 25 1 4.3701 -2.8292 -1.0313 26 1 5.1516 -2.4024 0.5099 27 1 3.5910 -3.2586 0.5105 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260610298.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:02 Heat of formation + Delta-G solvation = 24.890588 kcal Electronic energy + Delta-G solvation = -11479.074785 eV Core-core repulsion = 9429.313251 eV Total energy + Delta-G solvation = -2049.761534 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.44121 -34.67912 -33.46944 -32.40237 -29.59028 -28.34141 -26.16515 -23.31220 -22.33199 -20.57686 -17.11599 -16.47808 -15.43629 -14.74065 -14.71000 -13.29610 -13.02937 -12.95703 -12.52905 -12.28448 -12.03518 -11.90961 -11.83689 -11.27668 -11.09433 -10.70043 -10.48435 -9.86439 -9.69059 -9.50141 -8.66376 -8.43140 -8.17707 -6.15597 -4.20500 1.67242 1.73028 3.24243 3.31216 3.34897 4.29025 4.42942 4.49403 4.71234 5.19383 5.28392 5.63114 5.76133 5.77900 5.80071 6.02076 6.12830 6.20628 6.40603 6.50354 6.68077 7.12769 7.40359 7.49591 7.70299 7.79780 8.15836 8.74169 8.83407 9.44428 10.94058 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.055003 B = 0.009680 C = 0.009444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.937270 B = 2891.818858 C = 2964.126825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.276 3.724 3 N -0.528 5.528 4 C 0.134 3.866 5 C -0.139 4.139 6 C 0.058 3.942 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.063 3.937 10 N -0.891 5.891 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.164 3.836 16 C -0.097 4.097 17 N -0.525 5.525 18 H 0.075 0.925 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.163 0.837 22 H 0.032 0.968 23 H 0.039 0.961 24 H 0.264 0.736 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.631 -1.326 1.333 8.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.009 3.991 3 N -0.243 5.243 4 C -0.031 4.031 5 C -0.143 4.143 6 C 0.020 3.980 7 C -0.553 4.553 8 H 0.073 0.927 9 C -0.139 4.139 10 N -0.529 5.529 11 Si 0.723 3.277 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.019 3.981 16 C -0.154 4.154 17 N -0.241 5.241 18 H 0.094 0.906 19 H 0.096 0.904 20 H 0.096 0.904 21 H 0.180 0.820 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.436 -1.327 1.377 9.628 hybrid contribution 1.442 0.064 -1.006 1.759 sum -7.995 -1.263 0.371 8.102 Atomic orbital electron populations 1.20379 0.86783 1.03212 1.02888 1.22885 0.97542 0.83929 0.94794 1.68104 1.10535 1.30448 1.15232 1.23092 0.88804 0.98783 0.92432 1.22259 1.01886 0.93547 0.96639 1.18273 0.82640 0.98950 0.98146 1.20949 0.91459 1.51412 0.91470 0.92714 1.24970 0.96764 0.94904 0.97309 1.69945 1.02301 1.49777 1.30902 0.86528 0.78278 0.78352 0.84539 1.20504 1.21025 1.19811 1.21569 0.88679 0.96410 0.91489 1.20694 0.99750 0.91362 1.03602 1.67952 1.10037 1.30591 1.15481 0.90644 0.90401 0.90429 0.82023 0.94955 0.94311 0.92647 0.89922 0.89299 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.32 36.00 0.37 -0.63 15 2 C 0.28 5.17 7.64 -157.19 -1.20 3.97 15 3 N -0.53 -10.44 10.34 -10.72 -0.11 -10.55 15 4 C 0.13 2.72 10.99 -17.20 -0.19 2.53 15 5 C -0.14 -3.04 5.10 -104.36 -0.53 -3.57 15 6 C 0.06 1.40 4.68 -29.04 -0.14 1.27 15 7 C -0.51 -13.73 9.09 -34.44 -0.31 -14.05 15 8 H 0.05 1.48 7.74 -52.48 -0.41 1.08 15 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 10 N -0.89 -25.12 13.29 55.43 0.74 -24.38 15 11 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 15 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 14 H -0.27 -6.32 7.11 56.52 0.40 -5.91 15 15 C 0.16 3.39 6.82 -82.24 -0.56 2.82 15 16 C -0.10 -1.75 9.84 36.01 0.35 -1.40 15 17 N -0.53 -10.46 10.27 -6.99 -0.07 -10.53 15 18 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 19 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 20 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 21 H 0.16 2.98 8.06 -52.48 -0.42 2.56 15 22 H 0.03 0.82 8.07 -51.93 -0.42 0.40 15 23 H 0.04 0.97 6.30 -51.93 -0.33 0.64 15 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 25 H 0.08 1.49 8.14 -51.93 -0.42 1.06 15 26 H 0.09 1.65 6.16 -51.93 -0.32 1.33 15 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 LS Contribution 240.05 15.07 3.62 3.62 Total: -1.00 -29.35 240.05 -6.30 -35.65 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -3.14 Total: -2.20 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.30 Total: -7.45 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.55 Total: -45.46 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.35 -6.30 -35.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260610298.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.538 kcal (2) G-P(sol) polarization free energy of solvation -29.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds