Wall clock time and date at job start Mon Mar 30 2020 02:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31795 * 119.12283 * 2 1 4 4 C 1.32326 * 120.81968 * 180.02562 * 3 2 1 5 5 C 1.38605 * 119.10381 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.80030 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.47286 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47175 * 119.99910 * 6 5 4 9 9 C 1.50699 * 109.47220 * 240.00214 * 6 5 4 10 10 H 1.08005 * 120.00001 * 359.97438 * 9 6 5 11 11 C 1.37874 * 120.00274 * 180.02562 * 9 6 5 12 12 N 1.31516 * 119.99947 * 359.97438 * 11 9 6 13 13 Si 1.86796 * 120.00118 * 179.97438 * 11 9 6 14 14 H 1.48504 * 109.47156 * 60.00066 * 13 11 9 15 15 H 1.48505 * 109.47136 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47395 * 299.99883 * 13 11 9 17 17 C 1.38592 * 118.39963 * 359.97438 * 5 4 3 18 18 N 1.31793 * 119.12072 * 180.02562 * 2 1 3 19 19 H 1.09001 * 109.47477 * 269.97686 * 1 2 3 20 20 H 1.08999 * 109.47700 * 29.97859 * 1 2 3 21 21 H 1.09004 * 109.47180 * 149.98357 * 1 2 3 22 22 H 1.07997 * 120.45199 * 180.27078 * 4 3 2 23 23 H 1.08999 * 109.47267 * 60.00083 * 8 6 5 24 24 H 1.09002 * 109.46838 * 180.02562 * 8 6 5 25 25 H 1.09005 * 109.47128 * 299.99791 * 8 6 5 26 26 H 0.97004 * 120.00062 * 179.97438 * 12 11 9 27 27 H 1.08003 * 120.45108 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1513 0.0000 4 6 3.4711 1.1905 -0.0005 5 6 4.1808 0.0000 -0.0005 6 6 5.6878 0.0000 -0.0017 7 1 6.0512 1.0277 -0.0029 8 6 6.1988 -0.7207 1.2475 9 6 6.1893 -0.7109 -1.2322 10 1 5.4869 -1.1221 -1.9422 11 6 7.5446 -0.8375 -1.4511 12 7 8.3999 -0.3373 -0.5863 13 14 8.1661 -1.7193 -2.9760 14 1 7.6706 -1.0200 -4.1888 15 1 9.6511 -1.7192 -2.9772 16 1 7.6707 -3.1193 -2.9748 17 6 3.4712 -1.1905 0.0006 18 7 2.1484 -1.1513 -0.0005 19 1 -0.3634 -0.0004 1.0276 20 1 -0.3634 0.8901 -0.5135 21 1 -0.3634 -0.8899 -0.5141 22 1 3.9906 2.1373 0.0039 23 1 5.8355 -1.7483 1.2483 24 1 7.2888 -0.7202 1.2469 25 1 5.8362 -0.2064 2.1376 26 1 9.3535 -0.4266 -0.7401 27 1 3.9907 -2.1374 0.0002 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260626936.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:26 Heat of formation + Delta-G solvation = 29.214786 kcal Electronic energy + Delta-G solvation = -11521.522329 eV Core-core repulsion = 9471.948306 eV Total energy + Delta-G solvation = -2049.574023 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.39391 -35.17359 -33.03085 -32.38153 -30.27294 -27.03559 -25.24256 -23.96985 -22.54189 -20.04821 -17.16820 -16.15563 -16.01968 -14.85723 -14.60107 -13.47814 -12.96335 -12.74733 -12.71103 -12.34625 -12.09017 -11.70667 -11.22452 -10.96838 -10.92289 -10.45025 -10.32428 -10.10532 -9.48357 -9.30067 -8.62927 -8.42503 -8.25029 -6.12961 -4.21534 1.65782 1.73490 3.25683 3.30539 3.33681 4.30226 4.43194 4.52102 4.75388 5.18178 5.42725 5.67426 5.76880 5.80433 5.81608 6.00132 6.30651 6.60808 6.73822 6.88960 7.03376 7.17050 7.53114 7.64401 7.74463 7.95105 8.21646 8.70761 8.79934 9.44473 10.92449 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.057734 B = 0.009894 C = 0.009281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.868818 B = 2829.307278 C = 3016.135253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.272 3.728 3 N -0.524 5.524 4 C 0.126 3.874 5 C -0.133 4.133 6 C 0.080 3.920 7 H 0.041 0.959 8 C -0.133 4.133 9 C -0.516 4.516 10 H 0.056 0.944 11 C 0.066 3.934 12 N -0.887 5.887 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.147 3.853 18 N -0.525 5.525 19 H 0.075 0.925 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.161 0.839 23 H 0.029 0.971 24 H 0.090 0.910 25 H 0.009 0.991 26 H 0.263 0.737 27 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.937 0.237 1.501 8.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.004 3.996 3 N -0.238 5.238 4 C -0.039 4.039 5 C -0.137 4.137 6 C 0.061 3.939 7 H 0.059 0.941 8 C -0.191 4.191 9 C -0.554 4.554 10 H 0.074 0.926 11 C -0.136 4.136 12 N -0.525 5.525 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.019 4.019 18 N -0.239 5.239 19 H 0.094 0.906 20 H 0.096 0.904 21 H 0.096 0.904 22 H 0.178 0.822 23 H 0.049 0.951 24 H 0.108 0.892 25 H 0.028 0.972 26 H 0.073 0.927 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.744 0.262 1.534 8.881 hybrid contribution 1.490 -0.457 -0.858 1.779 sum -7.254 -0.195 0.676 7.288 Atomic orbital electron populations 1.20387 0.86805 1.03231 1.02913 1.22930 0.97635 0.84111 0.94916 1.68095 1.10515 1.30562 1.14678 1.23130 0.88975 0.98777 0.92988 1.22425 1.01733 0.94048 0.95474 1.17794 0.82643 0.98219 0.95289 0.94141 1.21810 1.04701 0.97735 0.94851 1.21006 0.91653 1.36934 1.05782 0.92591 1.24934 0.96754 0.95333 0.96591 1.69862 1.02282 1.45061 1.35268 0.86598 0.77642 0.80269 0.83213 1.20220 1.21148 1.20091 1.23104 0.88376 0.99335 0.91041 1.68163 1.10713 1.30432 1.14588 0.90632 0.90425 0.90386 0.82198 0.95142 0.89181 0.97182 0.92658 0.81704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.32 36.01 0.37 -0.63 15 2 C 0.27 4.99 7.64 -157.19 -1.20 3.79 15 3 N -0.52 -10.09 10.33 -10.73 -0.11 -10.20 15 4 C 0.13 2.48 10.96 -17.20 -0.19 2.29 15 5 C -0.13 -2.82 4.74 -104.36 -0.50 -3.32 15 6 C 0.08 1.90 2.51 -92.93 -0.23 1.67 15 7 H 0.04 1.01 7.95 -51.93 -0.41 0.60 15 8 C -0.13 -3.04 8.79 37.16 0.33 -2.71 15 9 C -0.52 -13.43 8.27 -34.44 -0.28 -13.72 15 10 H 0.06 1.47 7.62 -52.48 -0.40 1.07 15 11 C 0.07 1.74 5.30 -17.82 -0.09 1.65 15 12 N -0.89 -24.09 11.32 55.43 0.63 -23.46 15 13 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 15 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 17 C 0.15 3.01 10.06 -17.20 -0.17 2.83 15 18 N -0.52 -10.32 10.33 -10.72 -0.11 -10.43 15 19 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 20 H 0.08 0.94 8.14 -51.93 -0.42 0.51 15 21 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.16 2.79 8.01 -52.49 -0.42 2.37 15 23 H 0.03 0.65 7.48 -51.93 -0.39 0.27 15 24 H 0.09 2.26 6.07 -51.93 -0.32 1.94 15 25 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 15 26 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 27 H 0.17 3.24 7.67 -52.48 -0.40 2.84 15 LS Contribution 237.12 15.07 3.57 3.57 Total: -1.00 -28.00 237.12 -6.18 -34.18 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -3.16 Total: -1.07 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.97 Total: -8.14 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.41 Total: -44.09 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.00 -6.18 -34.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260626936.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.391 kcal (2) G-P(sol) polarization free energy of solvation -27.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds