Wall clock time and date at job start Mon Mar 30 2020 01:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30896 * 1 3 3 Si 1.86802 * 119.99993 * 2 1 4 4 H 1.48492 * 109.47065 * 239.99851 * 3 2 1 5 5 H 1.48503 * 109.47117 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47102 * 119.99555 * 3 2 1 7 7 C 1.39847 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.41432 * 120.00006 * 0.02562 * 7 2 1 10 10 C 1.42226 * 126.56740 * 179.97438 * 9 7 2 11 11 C 1.35075 * 105.54613 * 180.02562 * 10 9 7 12 12 C 1.50703 * 126.31053 * 180.02562 * 11 10 9 13 13 C 1.53781 * 113.61479 * 242.48307 * 12 11 10 14 14 C 1.53787 * 87.07889 * 220.01775 * 13 12 11 15 15 C 1.53779 * 113.61096 * 144.98449 * 12 11 10 16 16 N 1.35899 * 107.37982 * 0.02562 * 11 10 9 17 17 H 0.97001 * 124.85949 * 179.97438 * 16 11 10 18 18 N 1.28474 * 110.27321 * 0.26637 * 16 11 10 19 19 H 0.97004 * 120.00222 * 0.02562 * 1 2 3 20 20 H 1.08003 * 127.23177 * 0.06916 * 10 9 7 21 21 H 1.08995 * 112.84937 * 13.79308 * 12 11 10 22 22 H 1.08995 * 113.61774 * 334.56962 * 13 12 11 23 23 H 1.09002 * 113.61020 * 105.47550 * 13 12 11 24 24 H 1.08994 * 113.61687 * 270.88134 * 14 13 12 25 25 H 1.09006 * 113.68660 * 139.98908 * 14 13 12 26 26 H 1.09004 * 113.61886 * 254.52762 * 15 12 11 27 27 H 1.09000 * 113.61665 * 25.43687 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6964 -1.2124 5 1 1.2779 2.7465 -0.0006 6 1 3.0966 1.6965 1.2125 7 6 2.0082 -1.2111 0.0005 8 1 3.0882 -1.2111 0.0010 9 6 1.3011 -2.4359 0.0005 10 6 1.8667 -3.7409 0.0005 11 6 0.8167 -4.5906 0.0000 12 6 0.8869 -6.0960 0.0003 13 6 0.2662 -6.7419 -1.2497 14 6 -0.3101 -7.8160 -0.3121 15 6 -0.2377 -6.7649 0.8081 16 7 -0.3147 -3.8378 -0.0010 17 1 -1.2172 -4.1933 -0.0019 18 7 -0.0177 -2.5878 -0.0066 19 1 -0.4851 0.8401 -0.0004 20 1 2.9156 -3.9985 0.0016 21 1 1.8808 -6.4733 0.2405 22 1 -0.4951 -6.1253 -1.7275 23 1 1.0036 -7.1272 -1.9539 24 1 0.3565 -8.6646 -0.1583 25 1 -1.3272 -8.1168 -0.5635 26 1 0.0927 -7.1688 1.7651 27 1 -1.1369 -6.1546 0.8929 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260779394.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:49 Heat of formation + Delta-G solvation = 57.583439 kcal Electronic energy + Delta-G solvation = -11518.162290 eV Core-core repulsion = 9469.818424 eV Total energy + Delta-G solvation = -2048.343866 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.38028 -39.20624 -35.27679 -31.98613 -31.07614 -27.61291 -26.45897 -25.88191 -22.14755 -21.36040 -20.31492 -18.25370 -18.01162 -16.57179 -16.25097 -15.43322 -15.15441 -14.50079 -13.97162 -13.55174 -13.37527 -13.11315 -12.82502 -12.80104 -12.48997 -11.94352 -11.49152 -11.33080 -11.12749 -11.08765 -10.33844 -9.53646 -9.10321 -8.27328 -6.22923 1.42783 1.44115 1.55664 1.73708 2.35407 2.41994 2.90939 3.64242 3.76557 3.83103 3.86877 4.13223 4.46006 4.75218 4.82424 4.85046 4.89121 5.09659 5.11885 5.19209 5.36472 5.47207 5.53659 5.72579 5.92712 6.42670 6.99075 7.03200 7.31663 8.36853 8.73097 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.105468 B = 0.008436 C = 0.008110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 265.419440 B = 3318.477355 C = 3451.550278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.021 3.979 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.150 3.850 10 C -0.325 4.325 11 C 0.027 3.973 12 C -0.043 4.043 13 C -0.133 4.133 14 C -0.121 4.121 15 C -0.137 4.137 16 N -0.432 5.432 17 H 0.427 0.573 18 N -0.371 5.371 19 H 0.271 0.729 20 H 0.132 0.868 21 H 0.114 0.886 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.040 -11.653 -0.262 11.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.530 4.530 8 H 0.097 0.903 9 C 0.000 4.000 10 C -0.355 4.355 11 C -0.102 4.102 12 C -0.063 4.063 13 C -0.172 4.172 14 C -0.158 4.158 15 C -0.174 4.174 16 N -0.140 5.140 17 H 0.268 0.732 18 N -0.204 5.204 19 H 0.080 0.920 20 H 0.150 0.850 21 H 0.132 0.868 22 H 0.083 0.917 23 H 0.097 0.903 24 H 0.120 0.880 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.259 -10.949 -0.266 11.024 hybrid contribution 0.640 0.475 0.003 0.796 sum -0.619 -10.474 -0.263 10.496 Atomic orbital electron populations 1.70102 1.08601 1.28369 1.38584 1.26717 0.95672 1.04066 0.92764 0.85222 0.78329 0.76007 0.79726 1.18582 1.19938 1.18559 1.18905 0.93749 0.89533 1.50771 0.90307 1.19781 0.88969 0.94001 0.97259 1.21635 0.98561 0.93106 1.22244 1.21439 0.87099 0.94976 1.06640 1.21244 1.00886 0.85140 0.99031 1.22968 1.00159 0.97828 0.96198 1.22783 1.02275 0.96309 0.94452 1.22979 0.97533 0.98019 0.98914 1.43473 1.07589 1.03992 1.58926 0.73152 1.74565 1.17095 0.96383 1.32334 0.91957 0.85045 0.86815 0.91749 0.90287 0.88020 0.90176 0.90151 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.13 11.97 21.81 0.26 -49.87 15 2 C 0.02 1.22 5.49 85.22 0.47 1.69 15 3 Si 0.99 43.08 29.56 68.60 2.03 45.11 15 4 H -0.26 -10.94 7.11 99.48 0.71 -10.24 15 5 H -0.27 -11.46 7.11 99.48 0.71 -10.76 15 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 15 7 C -0.49 -29.76 9.42 23.45 0.22 -29.54 15 8 H 0.08 4.50 7.84 -2.91 -0.02 4.48 15 9 C 0.15 9.09 6.78 40.78 0.28 9.36 15 10 C -0.33 -16.70 10.89 22.53 0.25 -16.46 15 11 C 0.03 1.16 6.29 41.20 0.26 1.42 15 12 C -0.04 -1.29 4.22 -11.01 -0.05 -1.33 15 13 C -0.13 -3.32 7.63 31.12 0.24 -3.09 15 14 C -0.12 -2.27 8.08 31.12 0.25 -2.02 15 15 C -0.14 -3.29 7.62 31.12 0.24 -3.05 15 16 N -0.43 -20.38 6.69 -47.62 -0.32 -20.70 15 17 H 0.43 16.81 8.16 -219.99 -1.80 15.01 15 18 N -0.37 -21.93 10.50 -51.61 -0.54 -22.47 15 19 H 0.27 15.07 8.30 -92.70 -0.77 14.30 15 20 H 0.13 6.16 8.06 -2.91 -0.02 6.14 15 21 H 0.11 3.10 8.14 -2.39 -0.02 3.08 15 22 H 0.06 1.78 8.09 -2.39 -0.02 1.77 15 23 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 24 H 0.10 1.52 8.14 -2.39 -0.02 1.50 15 25 H 0.08 1.31 8.14 -2.38 -0.02 1.29 15 26 H 0.08 1.74 8.14 -2.38 -0.02 1.72 15 27 H 0.07 1.74 7.16 -2.39 -0.02 1.72 15 Total: -1.00 -72.34 234.78 2.95 -69.38 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -0.62 Total: 21.57 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 2.15 Total: -43.02 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -0.60 Total: -93.04 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -72.34 2.95 -69.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260779394.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.965 kcal (2) G-P(sol) polarization free energy of solvation -72.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds