Wall clock time and date at job start Mon Mar 30 2020 02:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38438 * 126.48502 * 2 1 4 4 C 1.40064 * 127.05769 * 359.97438 * 3 2 1 5 5 H 1.07999 * 120.00272 * 0.02562 * 4 3 2 6 6 C 1.40070 * 119.99709 * 180.02562 * 4 3 2 7 7 N 1.30855 * 120.00310 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99972 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46826 * 0.02562 * 8 6 4 10 10 H 1.48490 * 109.47117 * 119.99933 * 8 6 4 11 11 H 1.48495 * 109.47124 * 240.00414 * 8 6 4 12 12 C 1.39626 * 105.87967 * 179.88698 * 3 2 1 13 13 N 1.33015 * 107.46058 * 0.37344 * 12 3 2 14 14 C 1.31012 * 109.98324 * 359.76028 * 13 12 3 15 15 C 1.50703 * 125.17897 * 180.02562 * 14 13 12 16 16 C 1.52998 * 117.49870 * 8.72251 * 15 14 13 17 17 C 1.53003 * 117.49727 * 300.06406 * 15 14 13 18 18 H 1.09002 * 109.47391 * 269.69271 * 1 2 3 19 19 H 1.09001 * 109.46813 * 149.69328 * 1 2 3 20 20 H 1.09004 * 109.47041 * 29.69455 * 1 2 3 21 21 H 0.96994 * 120.00078 * 179.97438 * 7 6 4 22 22 H 1.07999 * 126.26393 * 180.13282 * 12 3 2 23 23 H 1.08997 * 115.55202 * 154.39159 * 15 14 13 24 24 H 1.09011 * 117.49819 * 359.97438 * 16 15 14 25 25 H 1.09003 * 117.50359 * 145.02033 * 16 15 14 26 26 H 1.09004 * 117.49891 * 214.98050 * 17 15 14 27 27 H 1.09007 * 117.49639 * 359.97370 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2882 1.1131 0.0000 4 6 1.8914 2.4563 -0.0005 5 1 0.8414 2.7093 -0.0005 6 6 2.8563 3.4716 -0.0010 7 7 4.1285 3.1652 -0.0014 8 14 2.3272 5.2631 -0.0009 9 1 0.8442 5.3412 0.0003 10 1 2.8588 5.9362 1.2113 11 1 2.8578 5.9360 -1.2137 12 6 3.5951 0.6217 0.0026 13 7 3.5221 -0.7065 -0.0042 14 6 2.2682 -1.0860 -0.0058 15 6 1.7940 -2.5165 -0.0124 16 6 2.8451 -3.6100 0.1880 17 6 2.2169 -3.3954 -1.1913 18 1 -0.3634 -0.0055 1.0276 19 1 -0.3633 -0.8872 -0.5186 20 1 -0.3633 0.8927 -0.5091 21 1 4.7967 3.8682 -0.0021 22 1 4.4995 1.2120 0.0054 23 1 0.8044 -2.6857 0.4119 24 1 3.8797 -3.2949 0.3243 25 1 2.5469 -4.4990 0.7440 26 1 1.5056 -4.1431 -1.5422 27 1 2.8378 -2.9388 -1.9622 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260783718.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:45 Heat of formation + Delta-G solvation = 70.383547 kcal Electronic energy + Delta-G solvation = -11650.800748 eV Core-core repulsion = 9603.011936 eV Total energy + Delta-G solvation = -2047.788811 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.97124 -36.17763 -33.52610 -32.45372 -28.59003 -25.71449 -25.02012 -21.88113 -21.77015 -19.81464 -17.96707 -16.90098 -15.77598 -15.05614 -14.26432 -13.97196 -13.45741 -12.82056 -12.43573 -11.80882 -11.64559 -11.30268 -11.27887 -10.95577 -10.75766 -10.58138 -10.19322 -10.00496 -9.82904 -9.29249 -8.15009 -8.01979 -6.78807 -6.60393 -4.18993 2.95144 3.09494 3.14001 3.58956 3.92814 4.32111 4.42973 4.92050 5.35646 5.42762 5.51936 5.64481 5.73066 5.89747 6.03086 6.10072 6.14656 6.32896 6.63509 6.78160 7.05822 7.18025 7.68502 7.87455 8.02459 8.53046 8.91823 9.07236 9.15149 10.03244 10.35400 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.071279 B = 0.010258 C = 0.009221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.727802 B = 2728.959797 C = 3035.794422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.495 5.495 3 C 0.176 3.824 4 C -0.443 4.443 5 H 0.070 0.930 6 C 0.072 3.928 7 N -0.802 5.802 8 Si 0.925 3.075 9 H -0.265 1.265 10 H -0.274 1.274 11 H -0.274 1.274 12 C -0.131 4.131 13 N -0.476 5.476 14 C 0.100 3.900 15 C -0.047 4.047 16 C -0.163 4.163 17 C -0.179 4.179 18 H 0.050 0.950 19 H 0.062 0.938 20 H 0.071 0.929 21 H 0.278 0.722 22 H 0.185 0.815 23 H 0.097 0.903 24 H 0.104 0.896 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 -4.026 -0.394 6.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.188 5.188 3 C 0.065 3.935 4 C -0.479 4.479 5 H 0.089 0.911 6 C -0.145 4.145 7 N -0.430 5.430 8 Si 0.750 3.250 9 H -0.189 1.189 10 H -0.200 1.200 11 H -0.200 1.200 12 C -0.280 4.280 13 N -0.195 5.195 14 C -0.152 4.152 15 C -0.067 4.067 16 C -0.200 4.200 17 C -0.217 4.217 18 H 0.068 0.932 19 H 0.081 0.919 20 H 0.089 0.911 21 H 0.089 0.911 22 H 0.202 0.798 23 H 0.115 0.885 24 H 0.122 0.878 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.715 -4.500 -0.390 6.529 hybrid contribution -1.077 1.458 0.019 1.813 sum -5.792 -3.042 -0.372 6.552 Atomic orbital electron populations 1.21458 0.80114 1.02175 1.00971 1.44722 1.04881 1.06885 1.62304 1.19056 0.89412 0.86279 0.98748 1.18391 0.94068 0.88206 1.47195 0.91150 1.25653 0.94271 1.01315 0.93229 1.69623 1.01062 1.34608 1.37711 0.85998 0.79540 0.81057 0.78439 1.18875 1.19951 1.19952 1.23386 0.97107 0.87717 1.19827 1.69336 1.17522 1.15490 1.17145 1.20960 0.86499 0.87328 1.20373 1.19676 0.97761 0.86490 1.02793 1.22845 0.99703 0.98584 0.98905 1.22985 1.03880 1.02541 0.92280 0.93176 0.91912 0.91065 0.91119 0.79821 0.88510 0.87764 0.89638 0.89675 0.88888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 10.70 59.85 0.64 2.48 15 2 N -0.49 -12.27 3.20 -118.32 -0.38 -12.65 15 3 C 0.18 4.97 6.74 -83.68 -0.56 4.41 15 4 C -0.44 -12.00 9.05 -38.21 -0.35 -12.34 15 5 H 0.07 1.79 7.30 -52.49 -0.38 1.40 15 6 C 0.07 1.84 5.50 -17.28 -0.10 1.74 15 7 N -0.80 -21.43 10.35 55.56 0.57 -20.85 15 8 Si 0.92 19.07 29.56 -169.99 -5.03 14.05 15 9 H -0.26 -5.34 7.11 56.52 0.40 -4.94 15 10 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 11 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 12 C -0.13 -3.86 10.88 -16.52 -0.18 -4.04 15 13 N -0.48 -13.19 10.69 -9.76 -0.10 -13.30 15 14 C 0.10 2.47 7.43 -154.96 -1.15 1.32 15 15 C -0.05 -0.91 5.68 -91.77 -0.52 -1.43 15 16 C -0.16 -2.79 10.13 -26.69 -0.27 -3.06 15 17 C -0.18 -3.01 10.24 -26.69 -0.27 -3.28 15 18 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 19 H 0.06 1.01 7.64 -51.93 -0.40 0.61 15 20 H 0.07 1.30 7.49 -51.93 -0.39 0.91 15 21 H 0.28 6.70 8.30 -40.82 -0.34 6.37 15 22 H 0.19 5.57 5.78 -52.49 -0.30 5.27 15 23 H 0.10 1.63 7.88 -51.93 -0.41 1.22 15 24 H 0.10 2.00 7.86 -51.92 -0.41 1.59 15 25 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 26 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 27 H 0.09 1.73 8.14 -51.93 -0.42 1.31 15 LS Contribution 236.27 15.07 3.56 3.56 Total: -1.00 -30.75 236.27 -7.25 -37.99 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -3.11 Total: 5.39 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -2.76 Total: -14.19 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.09 Total: -46.80 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.75 -7.25 -37.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260783718.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.378 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds