Wall clock time and date at job start Mon Mar 30 2020 02:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50707 * 109.47037 * 2 1 4 4 N 1.32012 * 118.81365 * 90.00336 * 3 2 1 5 5 C 1.31936 * 121.08580 * 179.97438 * 4 3 2 6 6 C 1.41109 * 118.77317 * 359.97438 * 5 4 3 7 7 C 1.41420 * 121.04248 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99361 * 204.75530 * 7 6 5 9 9 C 1.39956 * 120.00380 * 24.74960 * 7 6 5 10 10 N 1.30825 * 119.99724 * 16.15436 * 9 7 6 11 11 Si 1.86796 * 120.00013 * 196.15001 * 9 7 6 12 12 H 1.48504 * 109.47024 * 265.19009 * 11 9 7 13 13 H 1.48493 * 109.47493 * 25.18951 * 11 9 7 14 14 H 1.48506 * 109.47207 * 145.19430 * 11 9 7 15 15 C 1.41065 * 117.90876 * 0.25055 * 6 5 4 16 16 C 1.50699 * 120.61184 * 179.72499 * 15 6 5 17 17 N 1.31969 * 118.77817 * 359.46755 * 15 6 5 18 18 H 1.08994 * 109.47516 * 59.99243 * 1 2 3 19 19 H 1.09000 * 109.47436 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47199 * 299.99681 * 1 2 3 21 21 H 1.09004 * 109.47199 * 240.00319 * 2 1 3 22 22 H 1.08999 * 109.47632 * 120.00035 * 2 1 3 23 23 H 1.08000 * 120.61411 * 179.97438 * 5 4 3 24 24 H 0.96992 * 119.99513 * 180.02562 * 10 9 7 25 25 H 1.08997 * 109.46937 * 90.00115 * 16 15 6 26 26 H 1.09001 * 109.47026 * 210.00180 * 16 15 6 27 27 H 1.09003 * 109.47016 * 330.00255 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2444 2.0207 1.1567 5 6 2.6843 3.2635 1.2090 6 6 2.9278 3.9493 0.0000 7 6 3.3992 5.2826 0.0001 8 1 3.2106 5.9220 -0.8496 9 6 4.1100 5.7735 1.1012 10 7 4.6125 4.9431 1.9785 11 14 4.3414 7.6143 1.3182 12 1 5.6466 8.0210 0.7382 13 1 3.2449 8.3363 0.6243 14 1 4.3168 7.9492 2.7648 15 6 2.6806 3.2650 -1.2086 16 6 2.9139 3.9414 -2.5349 17 7 2.2461 2.0200 -1.1564 18 1 -0.3634 0.5139 -0.8898 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8899 23 1 2.8548 3.7470 2.1595 24 1 5.1047 5.2834 2.7417 25 1 3.9390 3.7618 -2.8589 26 1 2.2230 3.5378 -3.2750 27 1 2.7486 5.0137 -2.4300 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260847927.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:00 Heat of formation + Delta-G solvation = 11.885829 kcal Electronic energy + Delta-G solvation = -11600.330625 eV Core-core repulsion = 9550.005162 eV Total energy + Delta-G solvation = -2050.325463 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.16185 -34.63251 -33.12080 -32.27134 -30.08727 -27.51026 -25.62226 -23.03733 -21.59090 -20.12537 -17.46463 -16.24579 -15.03003 -14.77742 -13.69726 -13.46093 -13.32012 -12.65573 -12.17204 -12.01828 -11.89955 -11.41089 -11.18165 -11.10617 -10.91481 -10.78698 -10.59560 -10.37709 -9.54417 -9.16196 -8.91776 -7.90685 -7.53610 -6.99091 -4.57957 2.52335 2.83227 2.96693 3.00024 3.07182 3.76605 4.50868 5.36039 5.47951 5.63371 5.95763 6.08787 6.13042 6.15444 6.42592 6.48399 6.56776 6.69036 6.80032 6.80989 6.94383 6.98954 7.07325 7.63994 7.77492 8.17043 8.38403 8.52012 8.94714 9.88479 9.94450 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.055914 B = 0.011074 C = 0.009750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.651222 B = 2527.760471 C = 2871.000262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.028 4.028 3 C 0.160 3.840 4 N -0.506 5.506 5 C 0.076 3.924 6 C 0.016 3.984 7 C -0.436 4.436 8 H 0.088 0.912 9 C 0.072 3.928 10 N -0.788 5.788 11 Si 0.916 3.084 12 H -0.268 1.268 13 H -0.258 1.258 14 H -0.273 1.273 15 C 0.035 3.965 16 C -0.070 4.070 17 N -0.496 5.496 18 H 0.050 0.950 19 H 0.048 0.952 20 H 0.051 0.949 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.158 0.842 24 H 0.287 0.713 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.986 0.357 -1.708 2.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 C -0.103 4.103 4 N -0.220 5.220 5 C -0.096 4.096 6 C 0.010 3.990 7 C -0.466 4.466 8 H 0.106 0.894 9 C -0.147 4.147 10 N -0.412 5.412 11 Si 0.740 3.260 12 H -0.193 1.193 13 H -0.182 1.182 14 H -0.198 1.198 15 C -0.114 4.114 16 C -0.128 4.128 17 N -0.210 5.210 18 H 0.069 0.931 19 H 0.067 0.933 20 H 0.070 0.930 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.175 0.825 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.180 -0.654 -1.510 2.731 hybrid contribution 0.640 1.758 0.283 1.892 sum -1.540 1.104 -1.227 2.257 Atomic orbital electron populations 1.21671 0.95924 1.00277 1.01718 1.19800 0.94942 0.90656 1.01353 1.21842 1.06913 0.97405 0.84157 1.67622 1.12539 1.11614 1.30186 1.23329 0.97898 0.89642 0.98761 1.19067 0.92175 0.95038 0.92747 1.19551 1.28742 0.95914 1.02368 0.89371 1.26046 0.93203 1.00910 0.94551 1.69743 1.23951 1.37163 1.10362 0.86154 0.79769 0.81402 0.78696 1.19302 1.18166 1.19762 1.21380 1.04885 0.90252 0.94933 1.20241 1.00464 0.99329 0.92727 1.67269 1.12348 1.10696 1.30686 0.93081 0.93323 0.92983 0.91642 0.91512 0.82546 0.90174 0.92554 0.93020 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.89 37.15 0.37 -2.00 15 2 C -0.03 -0.56 6.35 -27.88 -0.18 -0.74 15 3 C 0.16 3.98 6.90 -156.84 -1.08 2.90 15 4 N -0.51 -13.38 10.30 -10.08 -0.10 -13.48 15 5 C 0.08 2.04 9.99 -16.42 -0.16 1.88 15 6 C 0.02 0.43 5.59 -106.53 -0.60 -0.16 15 7 C -0.44 -10.90 8.55 -37.73 -0.32 -11.23 15 8 H 0.09 2.06 6.37 -52.49 -0.33 1.73 15 9 C 0.07 1.71 5.21 -17.34 -0.09 1.62 15 10 N -0.79 -19.49 10.95 55.55 0.61 -18.88 15 11 Si 0.92 17.49 29.59 -169.99 -5.03 12.46 15 12 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 13 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 14 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 15 C 0.03 0.88 6.90 -81.46 -0.56 0.32 15 16 C -0.07 -1.45 9.86 36.01 0.36 -1.10 15 17 N -0.50 -12.64 10.24 -6.38 -0.07 -12.70 15 18 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 19 H 0.05 0.68 8.14 -51.93 -0.42 0.25 15 20 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 21 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 22 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 23 H 0.16 4.23 6.25 -52.49 -0.33 3.90 15 24 H 0.29 6.40 8.30 -40.82 -0.34 6.07 15 25 H 0.06 1.11 8.14 -51.93 -0.42 0.68 15 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 27 H 0.07 1.29 6.39 -51.93 -0.33 0.96 15 LS Contribution 235.95 15.07 3.56 3.56 Total: -1.00 -28.22 235.95 -6.39 -34.62 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -3.09 Total: 2.94 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.27 Total: -8.50 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.44 Total: -45.07 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.22 -6.39 -34.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260847927.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.501 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds