Wall clock time and date at job start Mon Mar 30 2020 02:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50707 * 109.47037 * 2 1 4 4 N 1.32012 * 118.81365 * 90.00336 * 3 2 1 5 5 C 1.31936 * 121.08580 * 179.97438 * 4 3 2 6 6 C 1.41109 * 118.77317 * 359.97438 * 5 4 3 7 7 C 1.41420 * 121.04248 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99361 * 204.75530 * 7 6 5 9 9 C 1.39956 * 120.00380 * 24.74960 * 7 6 5 10 10 N 1.30825 * 119.99724 * 16.15436 * 9 7 6 11 11 Si 1.86796 * 120.00013 * 196.15001 * 9 7 6 12 12 H 1.48504 * 109.47024 * 265.19009 * 11 9 7 13 13 H 1.48493 * 109.47493 * 25.18951 * 11 9 7 14 14 H 1.48506 * 109.47207 * 145.19430 * 11 9 7 15 15 C 1.41065 * 117.90876 * 0.25055 * 6 5 4 16 16 C 1.50699 * 120.61184 * 179.72499 * 15 6 5 17 17 N 1.31969 * 118.77817 * 359.46755 * 15 6 5 18 18 H 1.08994 * 109.47516 * 59.99243 * 1 2 3 19 19 H 1.09000 * 109.47436 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47199 * 299.99681 * 1 2 3 21 21 H 1.09004 * 109.47199 * 240.00319 * 2 1 3 22 22 H 1.08999 * 109.47632 * 120.00035 * 2 1 3 23 23 H 1.08000 * 120.61411 * 179.97438 * 5 4 3 24 24 H 0.96992 * 119.99513 * 180.02562 * 10 9 7 25 25 H 1.08997 * 109.46937 * 90.00115 * 16 15 6 26 26 H 1.09001 * 109.47026 * 210.00180 * 16 15 6 27 27 H 1.09003 * 109.47016 * 330.00255 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2444 2.0207 1.1567 5 6 2.6843 3.2635 1.2090 6 6 2.9278 3.9493 0.0000 7 6 3.3992 5.2826 0.0001 8 1 3.2106 5.9220 -0.8496 9 6 4.1100 5.7735 1.1012 10 7 4.6125 4.9431 1.9785 11 14 4.3414 7.6143 1.3182 12 1 5.6466 8.0210 0.7382 13 1 3.2449 8.3363 0.6243 14 1 4.3168 7.9492 2.7648 15 6 2.6806 3.2650 -1.2086 16 6 2.9139 3.9414 -2.5349 17 7 2.2461 2.0200 -1.1564 18 1 -0.3634 0.5139 -0.8898 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8899 23 1 2.8548 3.7470 2.1595 24 1 5.1047 5.2834 2.7417 25 1 3.9390 3.7618 -2.8589 26 1 2.2230 3.5378 -3.2750 27 1 2.7486 5.0137 -2.4300 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260847927.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:00 Heat of formation + Delta-G solvation = -5.007130 kcal Electronic energy + Delta-G solvation = -11601.063158 eV Core-core repulsion = 9550.005162 eV Total energy + Delta-G solvation = -2051.057997 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.07772 -36.45402 -34.92540 -34.06432 -31.87660 -29.30537 -27.42446 -24.75054 -23.49684 -21.89944 -19.36194 -18.12533 -16.82656 -16.55100 -15.49863 -15.20941 -14.84877 -14.34160 -13.87867 -13.71198 -13.64147 -13.05943 -12.88101 -12.75132 -12.66537 -12.35889 -12.10421 -11.86770 -11.30804 -11.04917 -10.87264 -9.85353 -9.50804 -8.80206 -6.49910 0.66864 0.83017 1.40664 1.50455 1.57776 2.16362 2.67982 3.56833 3.66555 3.88447 4.31159 4.43149 4.55847 4.60292 4.78435 4.92917 4.99904 5.04045 5.08022 5.12186 5.21746 5.31101 5.38490 5.73447 5.86448 6.27884 6.44712 6.63713 6.98411 7.92002 8.17068 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.055914 B = 0.011074 C = 0.009750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.651222 B = 2527.760471 C = 2871.000262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.028 4.028 3 C 0.142 3.858 4 N -0.521 5.521 5 C 0.045 3.955 6 C -0.012 4.012 7 C -0.453 4.453 8 H 0.102 0.898 9 C 0.032 3.968 10 N -0.819 5.819 11 Si 0.995 3.005 12 H -0.259 1.259 13 H -0.252 1.252 14 H -0.268 1.268 15 C 0.021 3.979 16 C -0.064 4.064 17 N -0.506 5.506 18 H 0.043 0.957 19 H 0.087 0.913 20 H 0.039 0.961 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.146 0.854 24 H 0.296 0.704 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 1.110 -2.433 3.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.067 4.067 3 C -0.121 4.121 4 N -0.235 5.235 5 C -0.125 4.125 6 C -0.018 4.018 7 C -0.483 4.483 8 H 0.120 0.880 9 C -0.184 4.184 10 N -0.444 5.444 11 Si 0.814 3.186 12 H -0.184 1.184 13 H -0.175 1.175 14 H -0.192 1.192 15 C -0.129 4.129 16 C -0.121 4.121 17 N -0.219 5.219 18 H 0.062 0.938 19 H 0.106 0.894 20 H 0.058 0.942 21 H 0.097 0.903 22 H 0.092 0.908 23 H 0.163 0.837 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.243 0.080 -2.229 3.164 hybrid contribution 0.686 1.474 0.508 1.704 sum -1.558 1.555 -1.721 2.794 Atomic orbital electron populations 1.21596 0.93804 1.02525 1.00702 1.19958 0.96700 0.87795 1.02288 1.22804 1.06342 0.99261 0.83696 1.67632 1.13043 1.11617 1.31184 1.23261 0.99908 0.90493 0.98872 1.19418 0.93177 0.96171 0.93059 1.19900 1.28960 0.95684 1.03718 0.88038 1.27021 0.92097 1.05800 0.93522 1.69799 1.24032 1.39633 1.10886 0.84986 0.79991 0.74787 0.78823 1.18391 1.17490 1.19199 1.22141 1.03863 0.90464 0.96480 1.20286 1.01469 0.99612 0.90781 1.67413 1.12805 1.10908 1.30816 0.93830 0.89416 0.94209 0.90345 0.90830 0.83685 0.89263 0.91537 0.91306 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.89 71.98 0.71 -3.48 15 2 C -0.03 -1.09 6.35 29.85 0.19 -0.90 15 3 C 0.14 7.10 6.90 138.63 0.96 8.05 15 4 N -0.52 -28.14 10.30 -185.82 -1.91 -30.05 15 5 C 0.05 2.52 9.99 85.38 0.85 3.37 15 6 C -0.01 -0.63 5.59 -21.10 -0.12 -0.75 15 7 C -0.45 -22.58 8.55 23.47 0.20 -22.38 15 8 H 0.10 4.63 6.37 -2.91 -0.02 4.61 15 9 C 0.03 1.51 5.21 85.26 0.44 1.96 15 10 N -0.82 -40.81 10.95 21.83 0.24 -40.58 15 11 Si 0.99 34.77 29.59 68.60 2.03 36.80 15 12 H -0.26 -8.70 7.11 99.48 0.71 -7.99 15 13 H -0.25 -8.48 7.11 99.48 0.71 -7.78 15 14 H -0.27 -9.05 7.11 99.48 0.71 -8.35 15 15 C 0.02 1.06 6.90 43.23 0.30 1.36 15 16 C -0.06 -2.56 9.86 71.24 0.70 -1.86 15 17 N -0.51 -25.64 10.24 -174.10 -1.78 -27.42 15 18 H 0.04 1.47 8.14 -2.39 -0.02 1.45 15 19 H 0.09 2.18 8.14 -2.39 -0.02 2.16 15 20 H 0.04 1.38 8.14 -2.38 -0.02 1.36 15 21 H 0.08 2.79 8.14 -2.38 -0.02 2.77 15 22 H 0.07 2.70 8.14 -2.39 -0.02 2.68 15 23 H 0.15 8.20 6.25 -2.91 -0.02 8.18 15 24 H 0.30 13.21 8.30 -92.71 -0.77 12.45 15 25 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 26 H 0.07 2.47 8.14 -2.39 -0.02 2.45 15 27 H 0.08 2.87 6.39 -2.39 -0.02 2.86 15 Total: -1.00 -60.51 235.95 3.97 -56.54 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 1.16 Total: 19.34 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 4.24 Total: -14.63 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -3.46 Total: -98.05 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Total: -60.51 3.97 -56.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260847927.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.531 kcal (2) G-P(sol) polarization free energy of solvation -60.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds