Wall clock time and date at job start Mon Mar 30 2020 02:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35901 * 124.85890 * 2 1 4 4 C 1.35074 * 107.37903 * 180.15442 * 3 2 1 5 5 C 1.50697 * 127.22916 * 179.88368 * 4 3 2 6 6 C 1.53000 * 117.49504 * 351.06126 * 5 4 3 7 7 C 1.52997 * 60.00347 * 107.48912 * 6 5 4 8 8 C 1.42236 * 105.54435 * 359.61832 * 4 3 2 9 9 C 1.41427 * 126.56651 * 180.20216 * 8 4 3 10 10 H 1.08003 * 119.99985 * 0.02562 * 9 8 4 11 11 C 1.39851 * 120.00115 * 180.02562 * 9 8 4 12 12 N 1.30897 * 119.99643 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00127 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47724 * 89.99989 * 13 11 9 15 15 H 1.48509 * 109.47392 * 209.99853 * 13 11 9 16 16 H 1.48499 * 109.47251 * 329.99813 * 13 11 9 17 17 N 1.28473 * 124.86187 * 179.71657 * 2 1 3 18 18 H 1.08998 * 109.47360 * 270.25691 * 1 2 3 19 19 H 1.09006 * 109.47452 * 30.25976 * 1 2 3 20 20 H 1.09008 * 109.46891 * 150.25505 * 1 2 3 21 21 H 1.07999 * 126.31465 * 0.05508 * 3 2 1 22 22 H 1.08990 * 115.56356 * 205.37297 * 5 4 3 23 23 H 1.09002 * 117.49696 * 214.98125 * 6 5 4 24 24 H 1.09002 * 117.50343 * 0.02562 * 6 5 4 25 25 H 1.08999 * 117.49685 * 252.51237 * 7 6 5 26 26 H 1.08997 * 117.50044 * 107.48590 * 7 6 5 27 27 H 0.97002 * 119.99356 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2417 1.1152 0.0000 4 6 3.5301 0.7094 -0.0035 5 6 4.7601 1.5801 -0.0073 6 6 4.5615 3.0824 -0.2182 7 6 4.9442 2.5479 1.1634 8 6 3.4820 -0.7121 0.0036 9 6 4.5888 -1.5925 0.0072 10 1 5.5937 -1.1967 0.0049 11 6 4.3821 -2.9757 0.0136 12 7 3.1642 -3.4553 0.0168 13 14 5.8440 -4.1385 0.0190 14 1 6.2314 -4.4402 1.4205 15 1 5.4766 -5.3989 -0.6752 16 1 6.9862 -3.5010 -0.6840 17 7 2.1993 -1.0542 0.0052 18 1 -0.3634 0.0046 1.0276 19 1 -0.3634 0.8877 -0.5179 20 1 -0.3633 -0.8923 -0.5099 21 1 1.8932 2.1374 0.0008 22 1 5.6560 1.1265 -0.4310 23 1 5.3268 3.6171 -0.7807 24 1 3.5411 3.4411 -0.3538 25 1 4.1756 2.5549 1.9362 26 1 5.9612 2.7310 1.5098 27 1 3.0209 -4.4147 0.0209 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260852988.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:35 Heat of formation + Delta-G solvation = 97.369576 kcal Electronic energy + Delta-G solvation = -11645.080394 eV Core-core repulsion = 9598.461785 eV Total energy + Delta-G solvation = -2046.618609 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.38704 -36.32436 -33.40987 -31.32319 -28.47978 -27.27015 -24.21269 -21.95062 -21.71896 -19.61206 -18.14370 -16.71793 -15.62330 -14.54217 -14.49579 -14.30969 -13.47396 -12.89437 -12.17409 -12.04543 -11.78831 -11.02788 -10.96364 -10.85257 -10.69828 -10.27692 -9.98121 -9.91429 -9.53329 -9.08708 -8.25493 -7.32336 -7.07992 -6.18495 -4.02342 3.21578 3.29734 3.33705 3.46318 4.17734 4.29786 4.39398 4.79029 5.46337 5.54965 5.66586 5.69232 5.90438 5.98494 6.00110 6.06191 6.17450 6.35201 6.63674 6.69838 6.89783 7.33277 7.47566 7.60666 7.92419 8.45261 8.79424 9.11510 9.37868 10.40517 10.79994 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.031860 B = 0.014386 C = 0.010206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.620361 B = 1945.898009 C = 2742.843017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.340 5.340 3 C -0.042 4.042 4 C -0.230 4.230 5 C -0.032 4.032 6 C -0.193 4.193 7 C -0.186 4.186 8 C 0.201 3.799 9 C -0.445 4.445 10 H 0.077 0.923 11 C 0.071 3.929 12 N -0.784 5.784 13 Si 0.902 3.098 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.266 1.266 17 N -0.331 5.331 18 H 0.055 0.945 19 H 0.066 0.934 20 H 0.078 0.922 21 H 0.137 0.863 22 H 0.102 0.898 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 7.149 0.127 7.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.123 5.123 3 C -0.186 4.186 4 C -0.243 4.243 5 C -0.052 4.052 6 C -0.230 4.230 7 C -0.223 4.223 8 C 0.051 3.949 9 C -0.484 4.484 10 H 0.095 0.905 11 C -0.146 4.146 12 N -0.413 5.413 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.190 1.190 17 N -0.163 5.163 18 H 0.074 0.926 19 H 0.085 0.915 20 H 0.097 0.903 21 H 0.154 0.846 22 H 0.120 0.880 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.012 6.044 0.124 6.371 hybrid contribution 1.047 0.221 0.058 1.072 sum -0.965 6.265 0.182 6.342 Atomic orbital electron populations 1.21473 0.77314 1.02663 1.01576 1.45304 1.05643 1.03937 1.57382 1.21976 0.91798 0.91976 1.12876 1.19430 0.91261 0.94728 1.18924 1.19943 0.97214 0.88012 1.00015 1.22899 1.01471 0.98494 1.00113 1.22935 1.01312 1.06303 0.91785 1.19184 0.90691 0.88816 0.96186 1.18488 0.91726 0.89503 1.48683 0.90458 1.25737 0.95991 0.98895 0.93976 1.69988 1.20629 1.13091 1.37618 0.86440 0.82431 0.79766 0.78621 1.20051 1.20803 1.19048 1.74746 1.02766 1.07684 1.31085 0.92615 0.91499 0.90289 0.84565 0.87963 0.89784 0.89703 0.89567 0.89771 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.98 11.31 59.84 0.68 2.66 15 2 N -0.34 -8.15 3.72 -67.97 -0.25 -8.40 15 3 C -0.04 -0.94 10.84 -16.87 -0.18 -1.12 15 4 C -0.23 -5.69 5.92 -104.21 -0.62 -6.30 15 5 C -0.03 -0.67 6.13 -91.77 -0.56 -1.23 15 6 C -0.19 -3.18 10.03 -26.73 -0.27 -3.45 15 7 C -0.19 -3.22 10.23 -26.73 -0.27 -3.50 15 8 C 0.20 5.81 6.78 -84.72 -0.57 5.23 15 9 C -0.44 -12.88 9.26 -37.77 -0.35 -13.23 15 10 H 0.08 2.11 7.71 -52.48 -0.40 1.71 15 11 C 0.07 2.00 5.49 -17.35 -0.10 1.90 15 12 N -0.78 -23.02 11.97 55.54 0.67 -22.35 15 13 Si 0.90 20.57 29.56 -169.99 -5.02 15.55 15 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 16 H -0.27 -5.92 7.11 56.52 0.40 -5.51 15 17 N -0.33 -9.56 10.24 32.34 0.33 -9.23 15 18 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 19 H 0.07 0.93 8.13 -51.93 -0.42 0.51 15 20 H 0.08 1.38 8.14 -51.92 -0.42 0.96 15 21 H 0.14 2.53 7.27 -52.49 -0.38 2.15 15 22 H 0.10 2.12 8.01 -51.93 -0.42 1.70 15 23 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 24 H 0.08 1.35 7.08 -51.93 -0.37 0.98 15 25 H 0.09 1.53 8.14 -51.93 -0.42 1.10 15 26 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 27 H 0.27 7.18 8.30 -40.82 -0.34 6.84 15 LS Contribution 240.02 15.07 3.62 3.62 Total: -1.00 -32.85 240.02 -6.15 -39.00 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -3.24 Total: 0.85 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -2.25 Total: -19.03 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.74 Total: -39.98 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.85 -6.15 -39.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260852988.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.368 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds