Wall clock time and date at job start Mon Mar 30 2020 02:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35901 * 124.85890 * 2 1 4 4 C 1.35074 * 107.37903 * 180.15442 * 3 2 1 5 5 C 1.50697 * 127.22916 * 179.88368 * 4 3 2 6 6 C 1.53000 * 117.49504 * 351.06126 * 5 4 3 7 7 C 1.52997 * 60.00347 * 107.48912 * 6 5 4 8 8 C 1.42236 * 105.54435 * 359.61832 * 4 3 2 9 9 C 1.41427 * 126.56651 * 180.20216 * 8 4 3 10 10 H 1.08003 * 119.99985 * 0.02562 * 9 8 4 11 11 C 1.39851 * 120.00115 * 180.02562 * 9 8 4 12 12 N 1.30897 * 119.99643 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00127 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47724 * 89.99989 * 13 11 9 15 15 H 1.48509 * 109.47392 * 209.99853 * 13 11 9 16 16 H 1.48499 * 109.47251 * 329.99813 * 13 11 9 17 17 N 1.28473 * 124.86187 * 179.71657 * 2 1 3 18 18 H 1.08998 * 109.47360 * 270.25691 * 1 2 3 19 19 H 1.09006 * 109.47452 * 30.25976 * 1 2 3 20 20 H 1.09008 * 109.46891 * 150.25505 * 1 2 3 21 21 H 1.07999 * 126.31465 * 0.05508 * 3 2 1 22 22 H 1.08990 * 115.56356 * 205.37297 * 5 4 3 23 23 H 1.09002 * 117.49696 * 214.98125 * 6 5 4 24 24 H 1.09002 * 117.50343 * 0.02562 * 6 5 4 25 25 H 1.08999 * 117.49685 * 252.51237 * 7 6 5 26 26 H 1.08997 * 117.50044 * 107.48590 * 7 6 5 27 27 H 0.97002 * 119.99356 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2417 1.1152 0.0000 4 6 3.5301 0.7094 -0.0035 5 6 4.7601 1.5801 -0.0073 6 6 4.5615 3.0824 -0.2182 7 6 4.9442 2.5479 1.1634 8 6 3.4820 -0.7121 0.0036 9 6 4.5888 -1.5925 0.0072 10 1 5.5937 -1.1967 0.0049 11 6 4.3821 -2.9757 0.0136 12 7 3.1642 -3.4553 0.0168 13 14 5.8440 -4.1385 0.0190 14 1 6.2314 -4.4402 1.4205 15 1 5.4766 -5.3989 -0.6752 16 1 6.9862 -3.5010 -0.6840 17 7 2.1993 -1.0542 0.0052 18 1 -0.3634 0.0046 1.0276 19 1 -0.3634 0.8877 -0.5179 20 1 -0.3633 -0.8923 -0.5099 21 1 1.8932 2.1374 0.0008 22 1 5.6560 1.1265 -0.4310 23 1 5.3268 3.6171 -0.7807 24 1 3.5411 3.4411 -0.3538 25 1 4.1756 2.5549 1.9362 26 1 5.9612 2.7310 1.5098 27 1 3.0209 -4.4147 0.0209 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260852988.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:35 Heat of formation + Delta-G solvation = 76.273838 kcal Electronic energy + Delta-G solvation = -11645.995174 eV Core-core repulsion = 9598.461785 eV Total energy + Delta-G solvation = -2047.533389 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.25176 -37.79303 -35.41877 -33.12016 -30.33277 -29.14469 -26.03054 -23.56549 -23.07177 -21.55352 -19.87793 -18.62957 -17.45907 -16.37603 -16.21120 -15.81367 -14.95963 -14.77063 -14.01048 -13.46463 -13.40001 -12.80361 -12.66122 -12.42355 -12.26644 -12.20537 -11.74965 -11.38645 -11.14993 -11.09325 -10.20384 -9.33215 -8.87159 -8.24798 -6.14823 1.41177 1.42199 1.56452 1.73605 2.35318 2.40285 2.60349 3.27800 3.70676 4.06023 4.18405 4.24892 4.39337 4.50153 4.54296 4.70331 4.88557 4.89279 5.12938 5.25117 5.41416 5.45772 5.54635 5.76841 5.99359 6.48695 6.90418 7.05972 7.29293 8.42565 8.75852 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.031860 B = 0.014386 C = 0.010206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.620361 B = 1945.898009 C = 2742.843017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.350 5.350 3 C -0.031 4.031 4 C -0.249 4.249 5 C -0.076 4.076 6 C -0.159 4.159 7 C -0.174 4.174 8 C 0.153 3.847 9 C -0.479 4.479 10 H 0.077 0.923 11 C 0.019 3.981 12 N -0.828 5.828 13 Si 0.981 3.019 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.257 1.257 17 N -0.372 5.372 18 H 0.072 0.928 19 H 0.111 0.889 20 H 0.071 0.929 21 H 0.183 0.817 22 H 0.087 0.913 23 H 0.110 0.890 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.626 8.906 0.168 8.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.134 5.134 3 C -0.175 4.175 4 C -0.262 4.262 5 C -0.095 4.095 6 C -0.196 4.196 7 C -0.211 4.211 8 C 0.002 3.998 9 C -0.518 4.518 10 H 0.095 0.905 11 C -0.194 4.194 12 N -0.458 5.458 13 Si 0.803 3.197 14 H -0.193 1.193 15 H -0.200 1.200 16 H -0.181 1.181 17 N -0.205 5.205 18 H 0.091 0.909 19 H 0.129 0.871 20 H 0.090 0.910 21 H 0.200 0.800 22 H 0.105 0.895 23 H 0.128 0.872 24 H 0.115 0.885 25 H 0.100 0.900 26 H 0.123 0.877 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.750 7.824 0.165 8.018 hybrid contribution 0.855 -0.203 0.050 0.880 sum -0.895 7.621 0.215 7.676 Atomic orbital electron populations 1.21871 0.74105 1.04510 1.03271 1.45790 1.07643 1.03433 1.56565 1.22540 0.90975 0.93405 1.10603 1.19889 0.93792 0.93572 1.18908 1.19906 0.95519 0.90034 1.04040 1.23004 1.02997 0.94573 0.99010 1.22985 1.02472 1.03951 0.91690 1.19695 0.91013 0.91351 0.97712 1.18845 0.92131 0.90756 1.50076 0.90461 1.26694 0.99224 1.00409 0.93086 1.70125 1.23051 1.13514 1.39116 0.85227 0.78392 0.77130 0.78930 1.19259 1.20007 1.18115 1.74583 1.03615 1.10458 1.31810 0.90940 0.87080 0.91048 0.79996 0.89475 0.87176 0.88523 0.90003 0.87746 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.45 11.31 127.77 1.45 4.89 15 2 N -0.35 -16.62 3.72 -368.97 -1.37 -17.99 15 3 C -0.03 -1.33 10.84 83.33 0.90 -0.42 15 4 C -0.25 -12.32 5.92 -19.60 -0.12 -12.44 15 5 C -0.08 -3.05 6.13 -11.54 -0.07 -3.12 15 6 C -0.16 -4.68 10.03 30.59 0.31 -4.37 15 7 C -0.17 -5.59 10.23 30.60 0.31 -5.27 15 8 C 0.15 9.11 6.78 40.78 0.28 9.39 15 9 C -0.48 -28.82 9.26 23.45 0.22 -28.61 15 10 H 0.08 4.41 7.71 -2.91 -0.02 4.39 15 11 C 0.02 1.08 5.49 85.22 0.47 1.55 15 12 N -0.83 -50.35 11.97 21.81 0.26 -50.09 15 13 Si 0.98 43.34 29.56 68.60 2.03 45.37 15 14 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 15 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 16 H -0.26 -10.84 7.11 99.48 0.71 -10.13 15 17 N -0.37 -22.06 10.24 -51.60 -0.53 -22.58 15 18 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 19 H 0.11 2.69 8.13 -2.38 -0.02 2.67 15 20 H 0.07 2.47 8.14 -2.38 -0.02 2.45 15 21 H 0.18 6.00 7.27 -2.91 -0.02 5.98 15 22 H 0.09 3.68 8.01 -2.39 -0.02 3.66 15 23 H 0.11 2.69 8.14 -2.39 -0.02 2.67 15 24 H 0.10 2.62 7.08 -2.39 -0.02 2.60 15 25 H 0.08 2.70 8.14 -2.39 -0.02 2.68 15 26 H 0.10 2.90 8.14 -2.39 -0.02 2.88 15 27 H 0.27 15.02 8.30 -92.71 -0.77 14.25 15 Total: -1.00 -74.37 240.02 5.29 -69.08 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.16 Total: 14.62 kcal Atomic # 6 Polarization: -42.15 SS G_CDS: 3.74 Total: -38.40 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -1.64 Total: -90.66 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -74.37 5.29 -69.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260852988.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.357 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds