Wall clock time and date at job start Mon Mar 30 2020 02:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.40027 * 126.20822 * 2 1 4 4 C 1.31230 * 109.11338 * 179.78107 * 3 2 1 5 5 C 1.38699 * 109.08133 * 0.38750 * 4 3 2 6 6 C 1.50706 * 126.23465 * 179.87927 * 5 4 3 7 7 C 1.52997 * 117.49610 * 351.06643 * 6 5 4 8 8 C 1.53000 * 60.00071 * 107.48862 * 7 6 5 9 9 C 1.37465 * 126.20015 * 180.02562 * 2 1 3 10 10 C 1.40233 * 126.66281 * 359.97438 * 9 2 1 11 11 H 1.07999 * 119.99732 * 138.70910 * 10 9 2 12 12 C 1.40172 * 119.99896 * 318.71451 * 10 9 2 13 13 N 1.30757 * 119.99954 * 342.45443 * 12 10 9 14 14 Si 1.86798 * 119.99910 * 162.45587 * 12 10 9 15 15 H 1.48498 * 109.47106 * 59.99797 * 14 12 10 16 16 H 1.48492 * 109.47079 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47079 * 300.00057 * 14 12 10 18 18 H 1.09002 * 109.47377 * 274.09358 * 1 2 3 19 19 H 1.09008 * 109.47176 * 34.09135 * 1 2 3 20 20 H 1.09002 * 109.47593 * 154.08884 * 1 2 3 21 21 H 1.07998 * 125.46288 * 180.22763 * 4 3 2 22 22 H 1.08996 * 115.56215 * 205.37803 * 6 5 4 23 23 H 1.08998 * 117.49806 * 214.97615 * 7 6 5 24 24 H 1.09000 * 117.50432 * 0.02562 * 7 6 5 25 25 H 1.09000 * 117.49858 * 252.50847 * 8 7 6 26 26 H 1.09004 * 117.49958 * 107.48262 * 8 7 6 27 27 H 0.97002 * 119.99952 * 175.08758 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2921 1.1298 0.0000 4 6 3.5464 0.7441 0.0047 5 6 3.5945 -0.6420 -0.0009 6 6 4.8403 -1.4902 -0.0007 7 6 6.1793 -0.7786 -0.2045 8 6 5.8062 -1.3263 1.1745 9 6 2.2768 -1.1093 -0.0005 10 6 1.8636 -2.4494 -0.0006 11 1 2.3758 -3.1723 -0.6181 12 6 0.7857 -2.8504 0.8007 13 7 0.3863 -2.0909 1.7873 14 14 -0.0801 -4.4700 0.4591 15 1 0.8918 -5.5861 0.5803 16 1 -1.1784 -4.6607 1.4401 17 1 -0.6425 -4.4505 -0.9152 18 1 -0.3634 0.0734 1.0250 19 1 -0.3634 0.8511 -0.5761 20 1 -0.3634 -0.9243 -0.4491 21 1 4.4039 1.4007 0.0094 22 1 4.7303 -2.4874 -0.4265 23 1 6.9503 -1.3078 -0.7644 24 1 6.1593 0.3030 -0.3383 25 1 5.5407 -0.6052 1.9475 26 1 6.3317 -2.2160 1.5218 27 1 -0.4030 -2.3327 2.2967 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260861602.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:31 Heat of formation + Delta-G solvation = 82.175305 kcal Electronic energy + Delta-G solvation = -11818.039488 eV Core-core repulsion = 9770.762006 eV Total energy + Delta-G solvation = -2047.277482 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.17918 -35.95586 -33.71426 -31.05603 -29.29117 -25.64655 -24.79532 -21.65806 -21.39870 -19.74859 -18.17347 -16.90987 -15.26403 -14.57178 -14.40251 -13.70339 -13.21009 -12.84355 -12.40361 -11.76279 -11.48918 -11.19467 -11.12921 -11.00351 -10.76208 -10.43693 -10.27668 -9.67955 -9.43727 -9.09617 -8.89422 -7.62713 -6.84452 -6.63119 -4.54874 2.94567 3.06238 3.09281 3.61667 3.93342 4.09846 4.21987 4.83428 5.13306 5.62437 5.87206 6.02940 6.11016 6.27736 6.38713 6.45468 6.51863 6.72132 6.82087 6.89326 7.12316 7.16031 7.44012 7.59129 7.90602 8.31959 8.43037 8.73428 9.10045 9.51471 10.20452 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.036653 B = 0.014850 C = 0.011452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.727791 B = 1885.037851 C = 2444.420809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.141 3.859 2 N -0.391 5.391 3 N -0.383 5.383 4 C 0.055 3.945 5 C -0.329 4.329 6 C -0.015 4.015 7 C -0.197 4.197 8 C -0.191 4.191 9 C 0.300 3.700 10 C -0.474 4.474 11 H 0.091 0.909 12 C 0.081 3.919 13 N -0.810 5.810 14 Si 0.905 3.095 15 H -0.264 1.264 16 H -0.280 1.280 17 H -0.265 1.265 18 H 0.062 0.938 19 H 0.048 0.952 20 H 0.069 0.931 21 H 0.146 0.854 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.637 -1.494 -1.838 2.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 N -0.175 5.175 3 N -0.205 5.205 4 C -0.126 4.126 5 C -0.342 4.342 6 C -0.034 4.034 7 C -0.234 4.234 8 C -0.229 4.229 9 C 0.177 3.823 10 C -0.511 4.511 11 H 0.109 0.891 12 C -0.136 4.136 13 N -0.439 5.439 14 Si 0.729 3.271 15 H -0.189 1.189 16 H -0.205 1.205 17 H -0.190 1.190 18 H 0.080 0.920 19 H 0.067 0.933 20 H 0.088 0.912 21 H 0.163 0.837 22 H 0.111 0.889 23 H 0.098 0.902 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.596 -0.424 -1.621 1.778 hybrid contribution 0.047 -1.415 0.107 1.420 sum 0.643 -1.839 -1.514 2.467 Atomic orbital electron populations 1.21290 0.76878 1.00540 1.01479 1.48635 1.04699 1.03521 1.60660 1.76872 1.01105 1.09920 1.32592 1.22701 0.94259 0.94576 1.01112 1.19094 0.92151 0.91952 1.30992 1.19735 0.86915 0.97636 0.99103 1.22883 1.00211 1.00012 1.00299 1.22916 1.05720 1.02344 0.91885 1.18280 0.87405 0.87767 0.88876 1.18551 1.15698 0.92050 1.24790 0.89072 1.25784 0.96284 0.98835 0.92707 1.69839 1.21649 1.38861 1.13542 0.86420 0.79251 0.82345 0.79065 1.18863 1.20464 1.19012 0.92007 0.93339 0.91200 0.83719 0.88885 0.90195 0.89711 0.89700 0.90286 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.21 9.66 59.84 0.58 3.79 15 2 N -0.39 -10.32 4.03 -65.38 -0.26 -10.59 15 3 N -0.38 -10.06 12.54 30.45 0.38 -9.68 15 4 C 0.06 1.35 11.28 -17.64 -0.20 1.15 15 5 C -0.33 -8.28 5.88 -103.86 -0.61 -8.89 15 6 C -0.01 -0.31 6.02 -91.77 -0.55 -0.86 15 7 C -0.20 -3.49 10.02 -26.73 -0.27 -3.75 15 8 C -0.19 -3.62 10.23 -26.73 -0.27 -3.89 15 9 C 0.30 8.09 6.12 -84.00 -0.51 7.58 15 10 C -0.47 -12.33 8.79 -38.11 -0.33 -12.67 15 11 H 0.09 2.28 7.91 -52.49 -0.42 1.87 15 12 C 0.08 1.98 4.18 -17.28 -0.07 1.91 15 13 N -0.81 -20.56 10.97 55.56 0.61 -19.95 15 14 Si 0.90 18.22 29.60 -169.99 -5.03 13.19 15 15 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 16 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 17 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 18 H 0.06 1.42 7.37 -51.93 -0.38 1.04 15 19 H 0.05 0.97 8.14 -51.92 -0.42 0.55 15 20 H 0.07 1.55 6.95 -51.93 -0.36 1.19 15 21 H 0.15 3.04 7.17 -52.49 -0.38 2.67 15 22 H 0.09 1.98 8.14 -51.93 -0.42 1.55 15 23 H 0.08 1.24 8.14 -51.93 -0.42 0.81 15 24 H 0.08 1.46 6.97 -51.93 -0.36 1.10 15 25 H 0.08 1.68 8.14 -51.93 -0.42 1.25 15 26 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 27 H 0.28 6.53 8.30 -40.82 -0.34 6.19 15 LS Contribution 236.03 15.07 3.56 3.56 Total: -1.00 -28.72 236.03 -6.14 -34.86 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -3.14 Total: 4.25 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -2.25 Total: -15.64 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.73 Total: -40.22 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.72 -6.14 -34.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260861602.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.031 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds