Wall clock time and date at job start Mon Mar 30 2020 02:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.40027 * 126.20822 * 2 1 4 4 C 1.31230 * 109.11338 * 179.78107 * 3 2 1 5 5 C 1.38699 * 109.08133 * 0.38750 * 4 3 2 6 6 C 1.50706 * 126.23465 * 179.87927 * 5 4 3 7 7 C 1.52997 * 117.49610 * 351.06643 * 6 5 4 8 8 C 1.53000 * 60.00071 * 107.48862 * 7 6 5 9 9 C 1.37465 * 126.20015 * 180.02562 * 2 1 3 10 10 C 1.40233 * 126.66281 * 359.97438 * 9 2 1 11 11 H 1.07999 * 119.99732 * 138.70910 * 10 9 2 12 12 C 1.40172 * 119.99896 * 318.71451 * 10 9 2 13 13 N 1.30757 * 119.99954 * 342.45443 * 12 10 9 14 14 Si 1.86798 * 119.99910 * 162.45587 * 12 10 9 15 15 H 1.48498 * 109.47106 * 59.99797 * 14 12 10 16 16 H 1.48492 * 109.47079 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47079 * 300.00057 * 14 12 10 18 18 H 1.09002 * 109.47377 * 274.09358 * 1 2 3 19 19 H 1.09008 * 109.47176 * 34.09135 * 1 2 3 20 20 H 1.09002 * 109.47593 * 154.08884 * 1 2 3 21 21 H 1.07998 * 125.46288 * 180.22763 * 4 3 2 22 22 H 1.08996 * 115.56215 * 205.37803 * 6 5 4 23 23 H 1.08998 * 117.49806 * 214.97615 * 7 6 5 24 24 H 1.09000 * 117.50432 * 0.02562 * 7 6 5 25 25 H 1.09000 * 117.49858 * 252.50847 * 8 7 6 26 26 H 1.09004 * 117.49958 * 107.48262 * 8 7 6 27 27 H 0.97002 * 119.99952 * 175.08758 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2921 1.1298 0.0000 4 6 3.5464 0.7441 0.0047 5 6 3.5945 -0.6420 -0.0009 6 6 4.8403 -1.4902 -0.0007 7 6 6.1793 -0.7786 -0.2045 8 6 5.8062 -1.3263 1.1745 9 6 2.2768 -1.1093 -0.0005 10 6 1.8636 -2.4494 -0.0006 11 1 2.3758 -3.1723 -0.6181 12 6 0.7857 -2.8504 0.8007 13 7 0.3863 -2.0909 1.7873 14 14 -0.0801 -4.4700 0.4591 15 1 0.8918 -5.5861 0.5803 16 1 -1.1784 -4.6607 1.4401 17 1 -0.6425 -4.4505 -0.9152 18 1 -0.3634 0.0734 1.0250 19 1 -0.3634 0.8511 -0.5761 20 1 -0.3634 -0.9243 -0.4491 21 1 4.4039 1.4007 0.0094 22 1 4.7303 -2.4874 -0.4265 23 1 6.9503 -1.3078 -0.7644 24 1 6.1593 0.3030 -0.3383 25 1 5.5407 -0.6052 1.9475 26 1 6.3317 -2.2160 1.5218 27 1 -0.4030 -2.3327 2.2967 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260861602.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:27 Heat of formation + Delta-G solvation = 65.355281 kcal Electronic energy + Delta-G solvation = -11818.768859 eV Core-core repulsion = 9770.762006 eV Total energy + Delta-G solvation = -2048.006853 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.06700 -37.54248 -35.60258 -32.92834 -31.20290 -27.49511 -26.69869 -23.26154 -22.97837 -21.65077 -19.99650 -18.79873 -17.07187 -16.26202 -16.06783 -15.58231 -14.91899 -14.60486 -14.15417 -13.52563 -13.33201 -13.04754 -12.84852 -12.62850 -12.20969 -12.16122 -11.96259 -11.29458 -11.05375 -10.94096 -10.74285 -9.57897 -8.71019 -8.51087 -6.49581 1.28786 1.42788 1.53365 1.74757 2.23614 2.27546 2.36836 3.04263 3.46520 4.01008 4.30547 4.37816 4.56373 4.58774 4.63596 4.87978 4.92706 4.95503 5.19659 5.26137 5.37142 5.46640 5.64692 5.71217 6.02051 6.39832 6.55640 6.82306 7.17067 7.57162 8.37405 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.036653 B = 0.014850 C = 0.011452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.727791 B = 1885.037851 C = 2444.420809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.143 3.857 2 N -0.405 5.405 3 N -0.409 5.409 4 C 0.050 3.950 5 C -0.341 4.341 6 C -0.052 4.052 7 C -0.165 4.165 8 C -0.185 4.185 9 C 0.264 3.736 10 C -0.500 4.500 11 H 0.090 0.910 12 C 0.047 3.953 13 N -0.839 5.839 14 Si 0.978 3.022 15 H -0.262 1.262 16 H -0.271 1.271 17 H -0.259 1.259 18 H 0.054 0.946 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.176 0.824 22 H 0.087 0.913 23 H 0.109 0.891 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 -2.292 -2.099 3.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.190 5.190 3 N -0.232 5.232 4 C -0.131 4.131 5 C -0.353 4.353 6 C -0.072 4.072 7 C -0.202 4.202 8 C -0.222 4.222 9 C 0.140 3.860 10 C -0.537 4.537 11 H 0.108 0.892 12 C -0.168 4.168 13 N -0.469 5.469 14 Si 0.799 3.201 15 H -0.186 1.186 16 H -0.196 1.196 17 H -0.183 1.183 18 H 0.072 0.928 19 H 0.088 0.912 20 H 0.088 0.912 21 H 0.193 0.807 22 H 0.105 0.895 23 H 0.128 0.872 24 H 0.109 0.891 25 H 0.091 0.909 26 H 0.118 0.882 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.214 -1.207 -1.883 2.545 hybrid contribution -0.094 -1.129 0.212 1.152 sum 1.120 -2.336 -1.671 3.082 Atomic orbital electron populations 1.21342 0.75734 1.01508 1.01363 1.48926 1.05673 1.03477 1.60900 1.76791 1.02025 1.10474 1.33867 1.23179 0.94611 0.95014 1.00257 1.19642 0.93060 0.92748 1.29894 1.19763 0.87359 0.97701 1.02356 1.22965 0.97829 1.00380 0.98997 1.22934 1.04488 1.03014 0.91806 1.18816 0.88584 0.88564 0.90045 1.18763 1.17205 0.91982 1.25725 0.89179 1.26570 0.96192 1.02243 0.91772 1.69888 1.22126 1.40746 1.14101 0.85310 0.78047 0.77570 0.79189 1.18595 1.19551 1.18299 0.92785 0.91152 0.91160 0.80731 0.89464 0.87232 0.89107 0.90940 0.88171 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.55 9.66 127.77 1.23 7.78 15 2 N -0.41 -21.64 4.03 -360.76 -1.45 -23.09 15 3 N -0.41 -21.56 12.54 -57.58 -0.72 -22.28 15 4 C 0.05 2.43 11.28 84.89 0.96 3.39 15 5 C -0.34 -17.17 5.88 -19.37 -0.11 -17.28 15 6 C -0.05 -2.20 6.02 -11.54 -0.07 -2.27 15 7 C -0.16 -5.35 10.02 30.59 0.31 -5.05 15 8 C -0.19 -6.64 10.23 30.59 0.31 -6.33 15 9 C 0.26 14.41 6.12 39.13 0.24 14.65 15 10 C -0.50 -26.31 8.79 23.23 0.20 -26.10 15 11 H 0.09 4.58 7.91 -2.91 -0.02 4.56 15 12 C 0.05 2.29 4.18 85.32 0.36 2.64 15 13 N -0.84 -42.73 10.97 21.87 0.24 -42.49 15 14 Si 0.98 36.85 29.60 68.60 2.03 38.88 15 15 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 16 H -0.27 -9.75 7.11 99.48 0.71 -9.04 15 17 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 18 H 0.05 2.52 7.37 -2.39 -0.02 2.51 15 19 H 0.07 2.83 8.14 -2.38 -0.02 2.81 15 20 H 0.07 3.14 6.95 -2.39 -0.02 3.13 15 21 H 0.18 7.07 7.17 -2.91 -0.02 7.05 15 22 H 0.09 3.69 8.14 -2.39 -0.02 3.67 15 23 H 0.11 2.93 8.14 -2.39 -0.02 2.91 15 24 H 0.09 2.85 6.97 -2.39 -0.02 2.83 15 25 H 0.07 2.77 8.14 -2.39 -0.02 2.75 15 26 H 0.10 3.14 8.14 -2.38 -0.02 3.12 15 27 H 0.29 13.34 8.30 -92.71 -0.77 12.57 15 Total: -1.00 -61.08 236.03 4.68 -56.39 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 1.16 Total: 21.16 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 3.43 Total: -28.57 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -1.94 Total: -87.86 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Total: -61.08 4.68 -56.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260861602.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.750 kcal (2) G-P(sol) polarization free energy of solvation -61.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds