Wall clock time and date at job start Mon Mar 30 2020 01:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34888 * 126.11031 * 2 1 4 4 H 0.96997 * 126.02975 * 0.04844 * 3 2 1 5 5 N 1.40020 * 107.93716 * 180.02562 * 3 2 1 6 6 C 1.31042 * 108.24697 * 0.02562 * 5 3 2 7 7 C 1.35306 * 126.02957 * 180.02562 * 2 1 3 8 8 C 1.51281 * 142.71234 * 0.04846 * 7 2 1 9 9 H 1.08997 * 110.29214 * 316.14152 * 8 7 2 10 10 C 1.50707 * 110.29092 * 78.17284 * 8 7 2 11 11 H 1.07992 * 119.99990 * 3.32701 * 10 8 7 12 12 C 1.37876 * 119.99830 * 183.33162 * 10 8 7 13 13 N 1.31526 * 119.99944 * 8.69942 * 12 10 8 14 14 Si 1.86796 * 120.00162 * 188.70048 * 12 10 8 15 15 H 1.48498 * 109.46980 * 94.98450 * 14 12 10 16 16 H 1.48497 * 109.47295 * 214.98250 * 14 12 10 17 17 H 1.48502 * 109.46777 * 334.98654 * 14 12 10 18 18 C 1.54339 * 105.29742 * 197.15593 * 8 7 2 19 19 C 1.51319 * 142.36030 * 179.97438 * 6 5 3 20 20 H 1.08998 * 109.46980 * 89.97461 * 1 2 3 21 21 H 1.09001 * 109.47067 * 209.97437 * 1 2 3 22 22 H 1.08996 * 109.47367 * 329.97280 * 1 2 3 23 23 H 0.96998 * 119.99450 * 180.02562 * 13 12 10 24 24 H 1.08995 * 110.76719 * 91.72162 * 18 8 7 25 25 H 1.09009 * 110.76674 * 215.12375 * 18 8 7 26 26 H 1.08990 * 110.29613 * 43.85242 * 19 6 5 27 27 H 1.09003 * 110.29457 * 281.72499 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3020 1.0897 0.0000 4 1 2.0045 2.0130 0.0007 5 7 3.6323 0.6530 -0.0006 6 6 3.6340 -0.6574 -0.0015 7 6 2.3029 -1.0942 -0.0005 8 6 2.2697 -2.6067 -0.0019 9 1 1.5239 -2.9691 0.7056 10 6 1.9695 -3.1215 -1.3862 11 1 1.8682 -2.4299 -2.2093 12 6 1.8242 -4.4756 -1.6016 13 7 1.7765 -5.3026 -0.5799 14 14 1.6951 -5.1356 -3.3443 15 1 3.0376 -5.5646 -3.8118 16 1 0.7689 -6.2962 -3.3667 17 1 1.1760 -4.0706 -4.2396 18 6 3.6826 -3.0454 0.4377 19 6 4.5597 -1.8544 -0.0029 20 1 -0.3633 0.0005 -1.0277 21 1 -0.3633 -0.8902 0.5134 22 1 -0.3634 0.8897 0.5142 23 1 1.6746 -6.2552 -0.7316 24 1 3.7269 -3.1790 1.5186 25 1 3.9820 -3.9578 -0.0782 26 1 5.3745 -1.7031 0.7048 27 1 4.9546 -2.0257 -1.0044 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260955711.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:56 Heat of formation + Delta-G solvation = 66.407046 kcal Electronic energy + Delta-G solvation = -11853.677274 eV Core-core repulsion = 9805.716029 eV Total energy + Delta-G solvation = -2047.961245 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.67054 -35.63687 -32.44091 -31.48050 -28.64931 -27.62428 -25.70067 -23.55960 -21.25831 -18.71785 -18.27197 -16.43618 -15.87285 -14.56965 -14.45657 -13.55269 -13.40038 -12.69300 -12.29291 -12.09701 -11.84824 -11.15994 -11.04851 -10.91828 -10.74024 -10.27506 -9.99507 -9.86626 -9.16831 -9.10961 -8.41345 -8.34710 -7.31417 -5.97840 -3.99925 2.60472 3.32592 3.40029 3.43132 3.49556 3.68520 4.49039 5.03900 5.34748 5.42980 5.62934 6.01267 6.05002 6.18672 6.34919 6.40115 6.60684 6.81583 6.95238 7.09678 7.35207 7.47029 7.60962 7.90960 7.97748 8.06993 8.48801 8.52242 9.02613 9.62834 11.09723 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.042282 B = 0.013168 C = 0.011698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.060063 B = 2125.785575 C = 2392.998892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.064 3.936 3 N -0.493 5.493 4 H 0.428 0.572 5 N -0.302 5.302 6 C 0.050 3.950 7 C -0.204 4.204 8 C 0.117 3.883 9 H 0.038 0.962 10 C -0.499 4.499 11 H 0.053 0.947 12 C 0.063 3.937 13 N -0.889 5.889 14 Si 0.886 3.114 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.099 4.099 19 C -0.024 4.024 20 H 0.072 0.928 21 H 0.084 0.916 22 H 0.055 0.945 23 H 0.260 0.740 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.459 6.855 1.356 7.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 N -0.203 5.203 4 H 0.270 0.730 5 N -0.126 5.126 6 C -0.117 4.117 7 C -0.214 4.214 8 C 0.097 3.903 9 H 0.056 0.944 10 C -0.537 4.537 11 H 0.072 0.928 12 C -0.138 4.138 13 N -0.527 5.527 14 Si 0.714 3.286 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.137 4.137 19 C -0.064 4.064 20 H 0.091 0.909 21 H 0.103 0.897 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.226 7.682 1.399 7.812 hybrid contribution -0.752 -0.486 -1.047 1.378 sum -0.527 7.196 0.352 7.224 Atomic orbital electron populations 1.20265 0.88047 1.02618 1.02693 1.20044 0.93725 0.87292 1.05032 1.46148 1.03593 1.07277 1.63275 0.72954 1.76808 0.96257 1.11797 1.27693 1.23495 0.98478 0.91410 0.98292 1.21483 0.92009 0.98607 1.09339 1.17694 0.93227 0.82296 0.97046 0.94408 1.21030 1.47878 0.91394 0.93426 0.92834 1.24943 0.95251 0.97071 0.96575 1.69991 1.50027 1.03183 1.29545 0.86666 0.77907 0.78542 0.85448 1.20685 1.21342 1.20023 1.22339 0.96915 0.96319 0.98150 1.20566 0.95394 0.88917 1.01499 0.90933 0.89694 0.92641 0.93015 0.94066 0.89951 0.92286 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.43 36.01 0.38 -0.83 15 2 C 0.06 1.26 7.20 -82.29 -0.59 0.66 15 3 N -0.49 -8.95 7.35 33.46 0.25 -8.71 15 4 H 0.43 5.91 8.96 -182.66 -1.64 4.27 15 5 N -0.30 -6.41 12.70 33.90 0.43 -5.98 15 6 C 0.05 1.12 8.10 -81.93 -0.66 0.46 15 7 C -0.20 -4.70 6.05 -104.68 -0.63 -5.33 15 8 C 0.12 2.94 2.65 -91.93 -0.24 2.70 15 9 H 0.04 1.03 8.11 -51.93 -0.42 0.61 15 10 C -0.50 -13.59 8.47 -34.44 -0.29 -13.88 15 11 H 0.05 1.50 7.78 -52.49 -0.41 1.09 15 12 C 0.06 1.71 4.98 -17.81 -0.09 1.62 15 13 N -0.89 -24.94 12.78 55.43 0.71 -24.23 15 14 Si 0.89 21.07 29.55 -169.99 -5.02 16.05 15 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 18 C -0.10 -2.26 6.32 -25.33 -0.16 -2.42 15 19 C -0.02 -0.50 6.75 -26.88 -0.18 -0.68 15 20 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 21 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 24 H 0.04 0.89 8.14 -51.93 -0.42 0.46 15 25 H 0.08 2.01 7.22 -51.92 -0.37 1.64 15 26 H 0.06 1.06 8.14 -51.93 -0.42 0.63 15 27 H 0.08 1.60 8.14 -51.93 -0.42 1.18 15 LS Contribution 233.90 15.07 3.52 3.52 Total: -1.00 -30.29 233.90 -7.11 -37.40 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.51 Total: -0.35 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.48 Total: -17.70 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 1.39 Total: -38.92 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.29 -7.11 -37.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955711.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.802 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds