Wall clock time and date at job start Mon Mar 30 2020 02:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.81873 * 2 1 4 4 C 1.54436 * 110.95834 * 123.69798 * 2 1 3 5 5 C 1.51321 * 104.99515 * 143.90578 * 4 2 1 6 6 N 1.35215 * 141.94762 * 163.09685 * 5 4 2 7 7 H 0.96998 * 126.03410 * 359.95203 * 6 5 4 8 8 N 1.40007 * 107.93683 * 180.02562 * 6 5 4 9 9 C 1.30732 * 108.21281 * 359.93841 * 8 6 5 10 10 C 1.35137 * 110.30314 * 343.08113 * 5 4 2 11 11 C 1.51365 * 110.24716 * 359.97438 * 10 5 4 12 12 H 1.09007 * 110.32845 * 135.82334 * 11 10 5 13 13 C 1.50697 * 110.42206 * 258.01187 * 11 10 5 14 14 H 1.07998 * 120.00091 * 52.68626 * 13 11 10 15 15 C 1.37880 * 119.99811 * 232.69338 * 13 11 10 16 16 N 1.31520 * 119.99667 * 184.76083 * 15 13 11 17 17 Si 1.86801 * 120.00066 * 4.75525 * 15 13 11 18 18 H 1.48507 * 109.46912 * 84.67502 * 17 15 13 19 19 H 1.48500 * 109.47074 * 204.67043 * 17 15 13 20 20 H 1.48501 * 109.47284 * 324.67283 * 17 15 13 21 21 H 1.08999 * 109.47220 * 188.77762 * 1 2 3 22 22 H 1.08995 * 109.47275 * 308.78395 * 1 2 3 23 23 H 1.09000 * 109.46890 * 68.78247 * 1 2 3 24 24 H 1.08999 * 110.33839 * 262.79039 * 4 2 1 25 25 H 1.09006 * 110.33480 * 24.92759 * 4 2 1 26 26 H 1.08000 * 125.88105 * 180.02562 * 9 8 6 27 27 H 0.97003 * 119.99686 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0189 0.0000 4 6 2.0824 -0.8001 1.1999 5 6 3.3255 -1.4850 0.6748 6 7 4.4532 -2.1067 1.0870 7 1 4.7199 -2.2533 2.0081 8 7 5.1690 -2.5001 -0.0501 9 6 4.4941 -2.1289 -1.1064 10 6 3.3255 -1.4849 -0.6766 11 6 2.0814 -0.8001 -1.2004 12 1 2.3359 -0.1271 -2.0192 13 6 1.0720 -1.8214 -1.6577 14 1 0.7710 -2.6181 -0.9936 15 6 0.5329 -1.7387 -2.9240 16 7 -0.4158 -2.5726 -3.2905 17 14 1.1498 -0.4423 -4.1190 18 1 2.3611 -0.9466 -4.8146 19 1 0.0920 -0.1470 -5.1185 20 1 1.4869 0.7974 -3.3740 21 1 -0.3633 -1.0156 0.1568 22 1 -0.3633 0.6437 0.8010 23 1 -0.3633 0.3719 -0.9580 24 1 2.3377 -0.1274 2.0186 25 1 1.3523 -1.5388 1.5310 26 1 4.7867 -2.2900 -2.1334 27 1 -0.7954 -2.5142 -4.1813 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260989793.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:57 Heat of formation + Delta-G solvation = 75.747881 kcal Electronic energy + Delta-G solvation = -11980.035412 eV Core-core repulsion = 9932.479216 eV Total energy + Delta-G solvation = -2047.556196 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.79219 -36.43602 -32.32296 -30.88757 -29.45492 -27.81139 -25.00792 -23.21731 -20.91259 -19.24950 -18.51883 -16.91035 -16.41293 -14.59063 -13.94607 -13.63432 -13.54473 -12.98062 -12.54421 -11.97036 -11.73578 -11.16659 -11.01087 -10.84691 -10.76216 -10.37355 -9.85870 -9.66644 -9.36727 -9.11754 -8.82023 -8.50604 -7.33194 -6.03976 -4.00066 2.55477 3.31298 3.33716 3.40342 3.40977 3.66153 4.44998 5.15366 5.30264 5.51517 5.67976 5.73368 6.02670 6.19080 6.28917 6.50466 6.58215 6.61770 6.89742 7.07129 7.14784 7.22781 7.40602 7.52226 7.79873 7.98005 8.35682 8.58120 9.00947 9.58807 11.09223 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.038619 B = 0.015784 C = 0.013151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.865645 B = 1773.523848 C = 2128.626110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 H 0.057 0.943 4 C -0.027 4.027 5 C 0.025 3.975 6 N -0.475 5.475 7 H 0.426 0.574 8 N -0.309 5.309 9 C 0.063 3.937 10 C -0.203 4.203 11 C 0.075 3.925 12 H 0.044 0.956 13 C -0.485 4.485 14 H 0.072 0.928 15 C 0.071 3.929 16 N -0.901 5.901 17 Si 0.874 3.126 18 H -0.276 1.276 19 H -0.291 1.291 20 H -0.264 1.264 21 H 0.067 0.933 22 H 0.025 0.975 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.174 0.826 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.634 5.030 6.553 9.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.105 4.105 3 H 0.075 0.925 4 C -0.066 4.066 5 C -0.102 4.102 6 N -0.183 5.183 7 H 0.267 0.733 8 N -0.132 5.132 9 C -0.122 4.122 10 C -0.213 4.213 11 C 0.055 3.945 12 H 0.062 0.938 13 C -0.523 4.523 14 H 0.090 0.910 15 C -0.130 4.130 16 N -0.539 5.539 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.218 1.218 20 H -0.189 1.189 21 H 0.086 0.914 22 H 0.044 0.956 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.191 0.809 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.549 4.388 6.770 9.792 hybrid contribution -0.176 0.692 -0.581 0.921 sum 5.373 5.080 6.190 9.643 Atomic orbital electron populations 1.21512 0.93898 1.01779 0.99837 1.22035 0.96485 0.96917 0.95046 0.92457 1.20736 0.90321 0.97424 0.98131 1.21876 0.91329 1.00113 0.96894 1.45525 1.16522 1.48461 1.07822 0.73262 1.77180 1.20123 1.24554 0.91382 1.23251 0.93429 0.97722 0.97783 1.21710 0.98417 1.07579 0.93636 1.18410 0.88682 0.93911 0.93544 0.93794 1.20731 1.20665 1.11373 0.99543 0.90994 1.25057 0.94521 0.95632 0.97818 1.69899 1.26287 1.37883 1.19865 0.86907 0.78724 0.83025 0.81133 1.20158 1.21775 1.18918 0.91396 0.95580 0.92540 0.92427 0.90077 0.80858 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 8.23 37.16 0.31 -1.85 15 2 C -0.09 -1.65 3.60 -89.11 -0.32 -1.97 15 3 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 4 C -0.03 -0.46 6.34 -26.83 -0.17 -0.63 15 5 C 0.03 0.49 8.07 -81.90 -0.66 -0.18 15 6 N -0.47 -8.41 7.37 33.64 0.25 -8.16 15 7 H 0.43 5.80 8.96 -182.67 -1.64 4.16 15 8 N -0.31 -6.14 12.69 30.67 0.39 -5.75 15 9 C 0.06 1.31 12.03 -17.29 -0.21 1.11 15 10 C -0.20 -4.45 6.20 -104.67 -0.65 -5.09 15 11 C 0.07 1.72 2.70 -91.84 -0.25 1.47 15 12 H 0.04 1.03 4.60 -51.93 -0.24 0.79 15 13 C -0.49 -12.95 6.84 -34.44 -0.24 -13.18 15 14 H 0.07 2.13 7.98 -52.49 -0.42 1.72 15 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 15 16 N -0.90 -26.72 13.96 55.43 0.77 -25.94 15 17 Si 0.87 20.96 27.25 -169.99 -4.63 16.32 15 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 20 H -0.26 -6.02 6.39 56.52 0.36 -5.66 15 21 H 0.07 1.41 7.04 -51.93 -0.37 1.04 15 22 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 15 23 H 0.06 1.15 8.08 -51.93 -0.42 0.73 15 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 15 25 H 0.08 1.40 7.75 -51.93 -0.40 1.00 15 26 H 0.17 3.20 8.06 -52.49 -0.42 2.78 15 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 LS Contribution 226.56 15.07 3.41 3.41 Total: -1.00 -30.34 226.56 -6.44 -36.78 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.35 Total: 1.81 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -2.28 Total: -18.46 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 1.41 Total: -39.86 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.63 Total: 16.32 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -30.34 -6.44 -36.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989793.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.525 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds