Wall clock time and date at job start Mon Mar 30 2020 02:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.81873 * 2 1 4 4 C 1.54436 * 110.95834 * 123.69798 * 2 1 3 5 5 C 1.51321 * 104.99515 * 143.90578 * 4 2 1 6 6 N 1.35215 * 141.94762 * 163.09685 * 5 4 2 7 7 H 0.96998 * 126.03410 * 359.95203 * 6 5 4 8 8 N 1.40007 * 107.93683 * 180.02562 * 6 5 4 9 9 C 1.30732 * 108.21281 * 359.93841 * 8 6 5 10 10 C 1.35137 * 110.30314 * 343.08113 * 5 4 2 11 11 C 1.51365 * 110.24716 * 359.97438 * 10 5 4 12 12 H 1.09007 * 110.32845 * 135.82334 * 11 10 5 13 13 C 1.50697 * 110.42206 * 258.01187 * 11 10 5 14 14 H 1.07998 * 120.00091 * 52.68626 * 13 11 10 15 15 C 1.37880 * 119.99811 * 232.69338 * 13 11 10 16 16 N 1.31520 * 119.99667 * 184.76083 * 15 13 11 17 17 Si 1.86801 * 120.00066 * 4.75525 * 15 13 11 18 18 H 1.48507 * 109.46912 * 84.67502 * 17 15 13 19 19 H 1.48500 * 109.47074 * 204.67043 * 17 15 13 20 20 H 1.48501 * 109.47284 * 324.67283 * 17 15 13 21 21 H 1.08999 * 109.47220 * 188.77762 * 1 2 3 22 22 H 1.08995 * 109.47275 * 308.78395 * 1 2 3 23 23 H 1.09000 * 109.46890 * 68.78247 * 1 2 3 24 24 H 1.08999 * 110.33839 * 262.79039 * 4 2 1 25 25 H 1.09006 * 110.33480 * 24.92759 * 4 2 1 26 26 H 1.08000 * 125.88105 * 180.02562 * 9 8 6 27 27 H 0.97003 * 119.99686 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9174 1.0189 0.0000 4 6 2.0824 -0.8001 1.1999 5 6 3.3255 -1.4850 0.6748 6 7 4.4532 -2.1067 1.0870 7 1 4.7199 -2.2533 2.0081 8 7 5.1690 -2.5001 -0.0501 9 6 4.4941 -2.1289 -1.1064 10 6 3.3255 -1.4849 -0.6766 11 6 2.0814 -0.8001 -1.2004 12 1 2.3359 -0.1271 -2.0192 13 6 1.0720 -1.8214 -1.6577 14 1 0.7710 -2.6181 -0.9936 15 6 0.5329 -1.7387 -2.9240 16 7 -0.4158 -2.5726 -3.2905 17 14 1.1498 -0.4423 -4.1190 18 1 2.3611 -0.9466 -4.8146 19 1 0.0920 -0.1470 -5.1185 20 1 1.4869 0.7974 -3.3740 21 1 -0.3633 -1.0156 0.1568 22 1 -0.3633 0.6437 0.8010 23 1 -0.3633 0.3719 -0.9580 24 1 2.3377 -0.1274 2.0186 25 1 1.3523 -1.5388 1.5310 26 1 4.7867 -2.2900 -2.1334 27 1 -0.7954 -2.5142 -4.1813 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260989793.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:57 Heat of formation + Delta-G solvation = 55.493096 kcal Electronic energy + Delta-G solvation = -11980.913726 eV Core-core repulsion = 9932.479216 eV Total energy + Delta-G solvation = -2048.434510 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.33984 -38.04239 -34.35397 -32.46729 -31.00560 -29.59525 -26.58414 -25.05948 -22.44630 -20.84526 -20.17068 -18.89307 -17.98723 -16.22219 -15.84351 -15.17750 -15.07066 -14.67020 -14.45427 -13.58936 -13.37341 -12.79454 -12.61998 -12.56982 -12.42873 -11.99760 -11.79123 -11.26812 -11.11683 -10.94100 -10.57119 -10.31388 -8.96481 -8.16978 -6.15546 1.02539 1.42034 1.43547 1.52663 1.91535 2.02679 2.43955 3.20026 3.72631 4.00693 4.16157 4.29939 4.53666 4.75629 4.85045 4.97972 5.01221 5.13028 5.23224 5.50401 5.55680 5.57232 5.71108 5.87721 5.93327 6.45525 6.60531 6.83208 6.87115 7.46058 9.00020 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.038619 B = 0.015784 C = 0.013151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.865645 B = 1773.523848 C = 2128.626110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.084 4.084 3 H 0.084 0.916 4 C -0.021 4.021 5 C 0.042 3.958 6 N -0.458 5.458 7 H 0.446 0.554 8 N -0.317 5.317 9 C 0.049 3.951 10 C -0.249 4.249 11 C 0.068 3.932 12 H 0.038 0.962 13 C -0.470 4.470 14 H 0.027 0.973 15 C 0.013 3.987 16 N -0.953 5.953 17 Si 0.933 3.067 18 H -0.272 1.272 19 H -0.293 1.293 20 H -0.242 1.242 21 H 0.038 0.962 22 H 0.066 0.934 23 H 0.035 0.965 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.186 0.814 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.819 6.844 7.989 12.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 H 0.102 0.898 4 C -0.061 4.061 5 C -0.087 4.087 6 N -0.169 5.169 7 H 0.291 0.709 8 N -0.141 5.141 9 C -0.136 4.136 10 C -0.260 4.260 11 C 0.048 3.952 12 H 0.056 0.944 13 C -0.509 4.509 14 H 0.046 0.954 15 C -0.183 4.183 16 N -0.595 5.595 17 Si 0.759 3.241 18 H -0.198 1.198 19 H -0.220 1.220 20 H -0.165 1.165 21 H 0.058 0.942 22 H 0.085 0.915 23 H 0.054 0.946 24 H 0.121 0.879 25 H 0.098 0.902 26 H 0.202 0.798 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.771 6.207 8.248 12.345 hybrid contribution -0.529 0.061 -0.910 1.055 sum 6.242 6.268 7.338 11.493 Atomic orbital electron populations 1.21431 0.94075 1.00811 1.00245 1.22027 0.96331 0.97986 0.94014 0.89794 1.20772 0.88991 0.97811 0.98485 1.22179 0.91570 0.98668 0.96246 1.45534 1.15688 1.47104 1.08547 0.70862 1.77143 1.20463 1.24743 0.91718 1.23530 0.93473 0.97798 0.98764 1.21754 0.99075 1.10012 0.95182 1.18424 0.88386 0.93231 0.95157 0.94378 1.20836 1.20795 1.10686 0.98540 0.95435 1.25825 0.94807 0.97930 0.99761 1.70054 1.28474 1.40541 1.20389 0.85941 0.77971 0.81310 0.78894 1.19798 1.21992 1.16533 0.94242 0.91516 0.94588 0.87853 0.90197 0.79753 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.95 8.23 71.98 0.59 -3.35 15 2 C -0.08 -3.01 3.60 -9.82 -0.04 -3.05 15 3 H 0.08 2.60 8.14 -2.39 -0.02 2.58 15 4 C -0.02 -0.66 6.34 30.53 0.19 -0.47 15 5 C 0.04 1.53 8.07 41.52 0.34 1.86 15 6 N -0.46 -14.91 7.37 -47.47 -0.35 -15.26 15 7 H 0.45 10.57 8.96 -213.38 -1.91 8.66 15 8 N -0.32 -11.99 12.69 -56.88 -0.72 -12.71 15 9 C 0.05 1.97 12.03 85.33 1.03 3.00 15 10 C -0.25 -10.59 6.20 -19.90 -0.12 -10.71 15 11 C 0.07 3.05 2.70 -11.59 -0.03 3.02 15 12 H 0.04 1.73 4.60 -2.38 -0.01 1.72 15 13 C -0.47 -25.61 6.84 25.60 0.17 -25.44 15 14 H 0.03 1.70 7.98 -2.91 -0.02 1.68 15 15 C 0.01 0.72 5.47 84.65 0.46 1.18 15 16 N -0.95 -58.60 13.96 21.45 0.30 -58.30 15 17 Si 0.93 43.40 27.25 68.60 1.87 45.27 15 18 H -0.27 -12.42 7.11 99.48 0.71 -11.71 15 19 H -0.29 -13.62 7.11 99.48 0.71 -12.91 15 20 H -0.24 -10.25 6.39 99.48 0.64 -9.61 15 21 H 0.04 1.63 7.04 -2.39 -0.02 1.61 15 22 H 0.07 1.87 8.14 -2.39 -0.02 1.85 15 23 H 0.03 1.43 8.08 -2.39 -0.02 1.41 15 24 H 0.10 2.33 8.14 -2.39 -0.02 2.31 15 25 H 0.08 2.54 7.75 -2.38 -0.02 2.53 15 26 H 0.19 6.71 8.06 -2.91 -0.02 6.68 15 27 H 0.26 15.23 8.31 -92.71 -0.77 14.45 15 Total: -1.00 -66.60 226.56 2.89 -63.71 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -0.80 Total: 11.25 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 2.60 Total: -33.95 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -0.77 Total: -86.27 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.87 Total: 45.27 kcal Total: -66.60 2.89 -63.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989793.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.201 kcal (2) G-P(sol) polarization free energy of solvation -66.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds