Wall clock time and date at job start Mon Mar 30 2020 02:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.84640 * 2 1 4 4 C 1.54437 * 110.92933 * 123.69543 * 2 1 3 5 5 C 1.51330 * 104.98977 * 92.45542 * 4 2 1 6 6 N 1.35216 * 141.94496 * 196.95413 * 5 4 2 7 7 H 0.97002 * 126.03571 * 359.94715 * 6 5 4 8 8 N 1.39999 * 107.93328 * 179.97438 * 6 5 4 9 9 C 1.30735 * 108.21817 * 0.02562 * 8 6 5 10 10 C 1.35139 * 110.30245 * 16.92770 * 5 4 2 11 11 C 1.51353 * 110.24935 * 0.02562 * 10 5 4 12 12 H 1.09006 * 110.41953 * 224.13714 * 11 10 5 13 13 C 1.50701 * 110.33674 * 101.94952 * 11 10 5 14 14 H 1.07997 * 119.99416 * 330.06184 * 13 11 10 15 15 C 1.37872 * 120.00121 * 150.06246 * 13 11 10 16 16 N 1.31517 * 119.99719 * 184.42674 * 15 13 11 17 17 Si 1.86799 * 120.00132 * 4.42222 * 15 13 11 18 18 H 1.48494 * 109.47098 * 275.21321 * 17 15 13 19 19 H 1.48503 * 109.46947 * 155.21931 * 17 15 13 20 20 H 1.48490 * 109.47105 * 35.21643 * 17 15 13 21 21 H 1.08996 * 109.46599 * 183.69345 * 1 2 3 22 22 H 1.08995 * 109.46813 * 303.69651 * 1 2 3 23 23 H 1.09001 * 109.47102 * 63.69697 * 1 2 3 24 24 H 1.08995 * 110.33858 * 211.33275 * 4 2 1 25 25 H 1.09002 * 110.33718 * 333.57913 * 4 2 1 26 26 H 1.08002 * 125.88374 * 179.97438 * 9 8 6 27 27 H 0.97003 * 120.00071 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9180 1.0187 0.0000 4 6 2.0817 -0.8003 1.2001 5 6 2.2800 -2.2058 0.6755 6 7 2.4596 -3.4808 1.0881 7 1 2.5024 -3.7819 2.0092 8 7 2.5735 -4.2899 -0.0488 9 6 2.4666 -3.5274 -1.1054 10 6 2.2800 -2.2061 -0.6759 11 6 2.0822 -0.8002 -1.2002 12 1 1.3634 -0.7974 -2.0196 13 6 3.3968 -0.2214 -1.6561 14 1 4.3165 -0.5316 -1.1826 15 6 3.4254 0.7040 -2.6777 16 7 4.5776 1.1438 -3.1345 17 14 1.8276 1.3329 -3.4132 18 1 1.3622 0.3922 -4.4637 19 1 2.0524 2.6727 -4.0130 20 1 0.7983 1.4339 -2.3478 21 1 -0.3632 -1.0255 0.0662 22 1 -0.3633 0.5701 0.8550 23 1 -0.3633 0.4554 -0.9213 24 1 3.0324 -0.3814 1.5299 25 1 1.3621 -0.7996 2.0189 26 1 2.5137 -3.8585 -2.1323 27 1 4.5978 1.7946 -3.8535 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260990122.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:00 Heat of formation + Delta-G solvation = 73.102061 kcal Electronic energy + Delta-G solvation = -11953.494775 eV Core-core repulsion = 9905.823847 eV Total energy + Delta-G solvation = -2047.670928 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.84216 -36.43762 -32.38371 -30.91537 -29.39684 -27.80279 -25.70356 -22.73792 -20.95667 -19.45247 -18.56908 -16.88879 -16.36629 -14.72826 -13.96872 -13.60050 -13.33525 -12.90497 -12.78480 -12.64949 -11.41300 -11.38768 -11.09611 -10.82729 -10.69172 -10.51018 -9.91006 -9.75357 -9.52689 -9.24716 -8.82721 -8.49282 -7.37740 -6.04541 -4.02863 2.53987 3.30982 3.31883 3.40379 3.41843 3.63727 4.44986 5.11620 5.32190 5.43660 5.66031 5.72047 5.95395 6.08041 6.10196 6.29962 6.40982 6.48425 6.76399 6.93413 6.96732 7.12926 7.31783 7.51623 7.77959 7.95956 8.33999 8.58541 9.02451 9.58140 11.08591 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.041424 B = 0.014854 C = 0.012919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.767625 B = 1884.528515 C = 2166.908942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.086 0.914 4 C -0.026 4.026 5 C 0.031 3.969 6 N -0.475 5.475 7 H 0.426 0.574 8 N -0.310 5.310 9 C 0.065 3.935 10 C -0.200 4.200 11 C 0.089 3.911 12 H 0.037 0.963 13 C -0.499 4.499 14 H 0.071 0.929 15 C 0.071 3.929 16 N -0.901 5.901 17 Si 0.871 3.129 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.257 1.257 21 H 0.047 0.953 22 H 0.043 0.957 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.176 0.824 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.353 -3.040 6.803 10.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.105 0.895 4 C -0.065 4.065 5 C -0.097 4.097 6 N -0.183 5.183 7 H 0.268 0.732 8 N -0.133 5.133 9 C -0.120 4.120 10 C -0.210 4.210 11 C 0.069 3.931 12 H 0.055 0.945 13 C -0.536 4.536 14 H 0.089 0.911 15 C -0.130 4.130 16 N -0.539 5.539 17 Si 0.698 3.302 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.181 1.181 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.100 0.900 25 H 0.078 0.922 26 H 0.193 0.807 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.092 -4.100 7.045 10.804 hybrid contribution -0.652 0.924 -0.330 1.178 sum -7.743 -3.176 6.716 10.730 Atomic orbital electron populations 1.21885 0.96590 1.00732 1.00872 1.22339 0.93401 1.00012 0.95505 0.89528 1.20684 1.01073 0.86651 0.98091 1.21901 1.02811 0.88087 0.96873 1.45519 1.61077 1.03844 1.07868 0.73205 1.77189 1.26847 1.17870 0.91355 1.23274 0.99481 0.91428 0.97848 1.21422 1.09961 0.96173 0.93481 1.18188 0.96699 0.85580 0.92678 0.94529 1.20874 0.92074 1.22822 1.17875 0.91090 1.25043 0.95909 0.96072 0.96020 1.69911 1.24808 1.31610 1.27561 0.86966 0.84924 0.78183 0.80092 1.20272 1.21764 1.18091 0.93408 0.93755 0.92671 0.90043 0.92215 0.80704 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.12 37.16 0.34 -2.07 15 2 C -0.09 -1.82 2.83 -89.10 -0.25 -2.07 15 3 H 0.09 1.77 7.89 -51.93 -0.41 1.36 15 4 C -0.03 -0.44 6.33 -26.82 -0.17 -0.61 15 5 C 0.03 0.59 8.07 -81.89 -0.66 -0.07 15 6 N -0.47 -8.30 7.37 33.65 0.25 -8.05 15 7 H 0.43 5.73 8.96 -182.67 -1.64 4.09 15 8 N -0.31 -6.05 12.69 30.67 0.39 -5.66 15 9 C 0.06 1.32 12.03 -17.29 -0.21 1.11 15 10 C -0.20 -4.34 6.20 -104.68 -0.65 -4.99 15 11 C 0.09 2.04 1.88 -91.84 -0.17 1.87 15 12 H 0.04 0.86 5.70 -51.93 -0.30 0.56 15 13 C -0.50 -13.67 8.81 -34.44 -0.30 -13.98 15 14 H 0.07 2.18 8.06 -52.49 -0.42 1.76 15 15 C 0.07 1.99 5.47 -17.82 -0.10 1.90 15 16 N -0.90 -27.15 13.96 55.43 0.77 -26.38 15 17 Si 0.87 20.74 26.77 -169.99 -4.55 16.19 15 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 20 H -0.26 -5.64 5.69 56.52 0.32 -5.32 15 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 23 H 0.05 0.96 6.95 -51.93 -0.36 0.60 15 24 H 0.08 1.41 8.14 -51.93 -0.42 0.98 15 25 H 0.06 0.85 7.91 -51.93 -0.41 0.44 15 26 H 0.18 3.13 8.06 -52.49 -0.42 2.71 15 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 LS Contribution 227.68 15.07 3.43 3.43 Total: -1.00 -30.95 227.68 -6.33 -37.27 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.44 Total: 2.12 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -2.17 Total: -18.91 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 1.41 Total: -40.10 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.55 Total: 16.19 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.95 -6.33 -37.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990122.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.376 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds