Wall clock time and date at job start Mon Mar 30 2020 02:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.84640 * 2 1 4 4 C 1.54437 * 110.92933 * 123.69543 * 2 1 3 5 5 C 1.51330 * 104.98977 * 92.45542 * 4 2 1 6 6 N 1.35216 * 141.94496 * 196.95413 * 5 4 2 7 7 H 0.97002 * 126.03571 * 359.94715 * 6 5 4 8 8 N 1.39999 * 107.93328 * 179.97438 * 6 5 4 9 9 C 1.30735 * 108.21817 * 0.02562 * 8 6 5 10 10 C 1.35139 * 110.30245 * 16.92770 * 5 4 2 11 11 C 1.51353 * 110.24935 * 0.02562 * 10 5 4 12 12 H 1.09006 * 110.41953 * 224.13714 * 11 10 5 13 13 C 1.50701 * 110.33674 * 101.94952 * 11 10 5 14 14 H 1.07997 * 119.99416 * 330.06184 * 13 11 10 15 15 C 1.37872 * 120.00121 * 150.06246 * 13 11 10 16 16 N 1.31517 * 119.99719 * 184.42674 * 15 13 11 17 17 Si 1.86799 * 120.00132 * 4.42222 * 15 13 11 18 18 H 1.48494 * 109.47098 * 275.21321 * 17 15 13 19 19 H 1.48503 * 109.46947 * 155.21931 * 17 15 13 20 20 H 1.48490 * 109.47105 * 35.21643 * 17 15 13 21 21 H 1.08996 * 109.46599 * 183.69345 * 1 2 3 22 22 H 1.08995 * 109.46813 * 303.69651 * 1 2 3 23 23 H 1.09001 * 109.47102 * 63.69697 * 1 2 3 24 24 H 1.08995 * 110.33858 * 211.33275 * 4 2 1 25 25 H 1.09002 * 110.33718 * 333.57913 * 4 2 1 26 26 H 1.08002 * 125.88374 * 179.97438 * 9 8 6 27 27 H 0.97003 * 120.00071 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9180 1.0187 0.0000 4 6 2.0817 -0.8003 1.2001 5 6 2.2800 -2.2058 0.6755 6 7 2.4596 -3.4808 1.0881 7 1 2.5024 -3.7819 2.0092 8 7 2.5735 -4.2899 -0.0488 9 6 2.4666 -3.5274 -1.1054 10 6 2.2800 -2.2061 -0.6759 11 6 2.0822 -0.8002 -1.2002 12 1 1.3634 -0.7974 -2.0196 13 6 3.3968 -0.2214 -1.6561 14 1 4.3165 -0.5316 -1.1826 15 6 3.4254 0.7040 -2.6777 16 7 4.5776 1.1438 -3.1345 17 14 1.8276 1.3329 -3.4132 18 1 1.3622 0.3922 -4.4637 19 1 2.0524 2.6727 -4.0130 20 1 0.7983 1.4339 -2.3478 21 1 -0.3632 -1.0255 0.0662 22 1 -0.3633 0.5701 0.8550 23 1 -0.3633 0.4554 -0.9213 24 1 3.0324 -0.3814 1.5299 25 1 1.3621 -0.7996 2.0189 26 1 2.5137 -3.8585 -2.1323 27 1 4.5978 1.7946 -3.8535 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990122.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:59 Heat of formation + Delta-G solvation = 52.036938 kcal Electronic energy + Delta-G solvation = -11954.408227 eV Core-core repulsion = 9905.823847 eV Total energy + Delta-G solvation = -2048.584380 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.37964 -38.01539 -34.45708 -32.48474 -30.86287 -29.61090 -27.20539 -24.59724 -22.47842 -20.97467 -20.17782 -18.95426 -17.96874 -16.39476 -15.75769 -15.10615 -14.86162 -14.70508 -14.36810 -14.20155 -13.18198 -12.92503 -12.72305 -12.48042 -12.22671 -12.06365 -11.69982 -11.46514 -11.24403 -11.13561 -10.57317 -10.31736 -8.99831 -8.20918 -6.23495 1.01856 1.43277 1.44418 1.56559 1.90619 2.01287 2.43741 3.14356 3.74124 3.95855 4.15135 4.32422 4.53011 4.62470 4.75554 4.89420 4.97869 5.07942 5.24596 5.44218 5.45391 5.50865 5.64874 5.80909 5.89770 6.42559 6.59226 6.81120 6.84058 7.41085 8.96096 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.041424 B = 0.014854 C = 0.012919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.767625 B = 1884.528515 C = 2166.908942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.021 4.021 5 C 0.048 3.952 6 N -0.458 5.458 7 H 0.446 0.554 8 N -0.317 5.317 9 C 0.051 3.949 10 C -0.247 4.247 11 C 0.086 3.914 12 H 0.032 0.968 13 C -0.496 4.496 14 H 0.020 0.980 15 C 0.010 3.990 16 N -0.955 5.955 17 Si 0.936 3.064 18 H -0.274 1.274 19 H -0.293 1.293 20 H -0.224 1.224 21 H 0.052 0.948 22 H 0.077 0.923 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.188 0.812 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 -3.122 8.309 13.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.092 0.908 4 C -0.061 4.061 5 C -0.081 4.081 6 N -0.168 5.168 7 H 0.292 0.708 8 N -0.140 5.140 9 C -0.134 4.134 10 C -0.258 4.258 11 C 0.066 3.934 12 H 0.050 0.950 13 C -0.534 4.534 14 H 0.038 0.962 15 C -0.186 4.186 16 N -0.596 5.596 17 Si 0.760 3.240 18 H -0.200 1.200 19 H -0.220 1.220 20 H -0.146 1.146 21 H 0.071 0.929 22 H 0.096 0.904 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.122 0.878 26 H 0.205 0.795 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.520 -4.219 8.599 13.505 hybrid contribution 0.206 0.865 -0.730 1.151 sum -9.314 -3.354 7.869 12.646 Atomic orbital electron populations 1.21824 0.93841 1.01648 1.02101 1.22216 0.95644 0.98926 0.94443 0.90767 1.20731 1.02147 0.84724 0.98455 1.22160 1.00699 0.89085 0.96188 1.45529 1.59575 1.03147 1.08597 0.70817 1.77153 1.27019 1.18141 0.91671 1.23564 0.99603 0.91326 0.98872 1.21504 1.13120 0.96105 0.95039 1.18140 0.94091 0.86966 0.94213 0.94998 1.21075 0.92562 1.22440 1.17295 0.96154 1.25936 0.99571 0.96440 0.96665 1.70080 1.27609 1.33053 1.28850 0.85921 0.81001 0.77115 0.79945 1.19975 1.21989 1.14614 0.92927 0.90449 0.93268 0.90245 0.87764 0.79506 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.12 71.98 0.66 -3.36 15 2 C -0.09 -3.38 2.83 -9.81 -0.03 -3.41 15 3 H 0.07 2.88 7.89 -2.39 -0.02 2.86 15 4 C -0.02 -0.68 6.33 30.54 0.19 -0.48 15 5 C 0.05 1.73 8.07 41.52 0.34 2.06 15 6 N -0.46 -14.84 7.37 -47.46 -0.35 -15.19 15 7 H 0.45 10.53 8.96 -213.38 -1.91 8.61 15 8 N -0.32 -11.87 12.69 -56.87 -0.72 -12.59 15 9 C 0.05 2.04 12.03 85.33 1.03 3.07 15 10 C -0.25 -10.50 6.20 -19.90 -0.12 -10.62 15 11 C 0.09 3.89 1.88 -11.58 -0.02 3.87 15 12 H 0.03 1.45 5.70 -2.38 -0.01 1.44 15 13 C -0.50 -27.92 8.81 25.60 0.23 -27.69 15 14 H 0.02 1.30 8.06 -2.91 -0.02 1.28 15 15 C 0.01 0.58 5.47 84.65 0.46 1.04 15 16 N -0.96 -59.73 13.96 21.45 0.30 -59.43 15 17 Si 0.94 42.78 26.77 68.60 1.84 44.62 15 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 15 19 H -0.29 -13.42 7.11 99.48 0.71 -12.71 15 20 H -0.22 -8.93 5.69 99.48 0.57 -8.36 15 21 H 0.05 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.05 1.50 6.95 -2.39 -0.02 1.48 15 24 H 0.08 2.57 8.14 -2.39 -0.02 2.55 15 25 H 0.10 2.41 7.91 -2.39 -0.02 2.39 15 26 H 0.19 6.69 8.06 -2.91 -0.02 6.67 15 27 H 0.26 15.47 8.31 -92.71 -0.77 14.70 15 Total: -1.00 -68.52 227.68 2.92 -65.60 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -0.88 Total: 12.51 kcal Atomic # 6 Polarization: -38.25 SS G_CDS: 2.73 Total: -35.53 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -0.77 Total: -87.20 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.84 Total: 44.62 kcal Total: -68.52 2.92 -65.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990122.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.640 kcal (2) G-P(sol) polarization free energy of solvation -68.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds