Wall clock time and date at job start Mon Mar 30 2020 02:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.84705 * 2 1 4 4 C 1.54436 * 110.92698 * 236.30055 * 2 1 3 5 5 C 1.51323 * 104.99126 * 267.54464 * 4 2 1 6 6 N 1.35225 * 141.94507 * 163.06784 * 5 4 2 7 7 H 0.96992 * 126.03342 * 0.02562 * 6 5 4 8 8 N 1.40003 * 107.93521 * 179.78611 * 6 5 4 9 9 C 1.30737 * 108.21281 * 0.38200 * 8 6 5 10 10 C 1.35140 * 110.30609 * 343.07721 * 5 4 2 11 11 C 1.51354 * 110.24728 * 359.97438 * 10 5 4 12 12 H 1.08993 * 110.33524 * 257.95091 * 11 10 5 13 13 C 1.50706 * 110.33151 * 135.81644 * 11 10 5 14 14 H 1.07995 * 120.00291 * 325.05388 * 13 11 10 15 15 C 1.37882 * 119.99466 * 145.06143 * 13 11 10 16 16 N 1.31516 * 120.00280 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99693 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46928 * 59.99672 * 17 15 13 19 19 H 1.48496 * 109.47206 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47177 * 299.99738 * 17 15 13 21 21 H 1.09000 * 109.46832 * 302.21657 * 1 2 3 22 22 H 1.08999 * 109.46458 * 62.21588 * 1 2 3 23 23 H 1.08998 * 109.47164 * 182.21215 * 1 2 3 24 24 H 1.08995 * 110.34182 * 26.42635 * 4 2 1 25 25 H 1.09005 * 110.33905 * 148.56748 * 4 2 1 26 26 H 1.08000 * 125.88078 * 179.88971 * 9 8 6 27 27 H 0.97004 * 119.99872 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9179 1.0187 0.0000 4 6 2.0816 -0.8003 -1.2001 5 6 2.2799 -2.2058 -0.6754 6 7 2.4598 -3.4809 -1.0880 7 1 2.5026 -3.7819 -2.0090 8 7 2.5789 -4.2892 0.0489 9 6 2.4661 -3.5275 1.1054 10 6 2.2799 -2.2062 0.6760 11 6 2.0820 -0.8002 1.2002 12 1 3.0325 -0.3823 1.5317 13 6 1.0871 -0.7986 2.3322 14 1 0.2515 -1.4826 2.3177 15 6 1.2436 0.0764 3.3862 16 7 2.2614 0.9092 3.4041 17 14 0.0108 0.0780 4.7897 18 1 -0.0078 -1.2600 5.4337 19 1 0.4014 1.1032 5.7905 20 1 -1.3409 0.3916 4.2608 21 1 -0.3633 0.5479 0.8695 22 1 -0.3632 0.4791 -0.9092 23 1 -0.3633 -1.0269 0.0397 24 1 1.3622 -0.7997 -2.0188 25 1 3.0315 -0.3804 -1.5311 26 1 2.5130 -3.8585 2.1324 27 1 2.3717 1.5245 4.1459 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260990124.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:03 Heat of formation + Delta-G solvation = 72.103322 kcal Electronic energy + Delta-G solvation = -11939.888146 eV Core-core repulsion = 9892.173910 eV Total energy + Delta-G solvation = -2047.714236 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.70414 -36.23410 -32.40694 -30.74978 -29.04459 -27.42276 -25.03285 -23.36205 -20.83689 -19.22299 -18.49688 -16.66378 -15.80324 -14.43802 -14.33392 -13.50453 -13.04093 -12.72439 -12.55359 -11.95607 -11.80994 -11.04755 -10.83430 -10.65232 -10.55093 -10.38540 -10.04703 -9.67033 -9.06354 -9.02225 -8.73619 -8.41505 -7.28564 -5.95662 -3.96750 2.61775 3.35051 3.39895 3.40551 3.43240 3.76067 4.49129 5.23333 5.39902 5.63761 5.79169 5.91251 6.20106 6.25977 6.36632 6.61921 6.69558 6.72739 7.17932 7.22292 7.40224 7.48065 7.66977 7.82631 7.97731 8.04202 8.42708 8.52421 9.09308 9.64631 11.12542 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.044493 B = 0.013503 C = 0.011778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.157433 B = 2073.153136 C = 2376.828122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.080 4.080 3 H 0.070 0.930 4 C -0.037 4.037 5 C 0.015 3.985 6 N -0.477 5.477 7 H 0.424 0.576 8 N -0.314 5.314 9 C 0.067 3.933 10 C -0.195 4.195 11 C 0.102 3.898 12 H 0.069 0.931 13 C -0.492 4.492 14 H 0.054 0.946 15 C 0.063 3.937 16 N -0.896 5.896 17 Si 0.886 3.114 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.277 1.277 21 H 0.066 0.934 22 H 0.022 0.978 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.176 0.824 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.729 -2.257 -6.964 7.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 H 0.089 0.911 4 C -0.077 4.077 5 C -0.112 4.112 6 N -0.186 5.186 7 H 0.265 0.735 8 N -0.137 5.137 9 C -0.118 4.118 10 C -0.205 4.205 11 C 0.083 3.917 12 H 0.087 0.913 13 C -0.531 4.531 14 H 0.072 0.928 15 C -0.138 4.138 16 N -0.535 5.535 17 Si 0.715 3.285 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 H 0.085 0.915 22 H 0.041 0.959 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.193 0.807 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.475 -3.292 -7.219 7.948 hybrid contribution -0.725 0.544 0.629 1.104 sum -1.200 -2.748 -6.590 7.240 Atomic orbital electron populations 1.21508 0.95366 1.00784 0.99322 1.22063 0.95755 0.98365 0.93751 0.91119 1.20880 1.00491 0.87157 0.99149 1.21963 1.03949 0.88077 0.97180 1.45533 1.61359 1.03943 1.07756 0.73454 1.77184 1.27163 1.17921 0.91464 1.23302 0.99217 0.91595 0.97668 1.21856 1.08318 0.97490 0.92879 1.18036 0.98110 0.83922 0.91672 0.91299 1.20922 1.09610 1.18661 1.03877 0.92792 1.24972 0.95332 0.95656 0.97859 1.69898 1.29289 1.22254 1.32058 0.86747 0.81819 0.77695 0.82286 1.20301 1.21446 1.20302 0.91474 0.95920 0.93834 0.92243 0.91066 0.80718 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 8.15 37.16 0.30 -1.95 15 2 C -0.08 -1.66 3.59 -89.10 -0.32 -1.98 15 3 H 0.07 1.48 8.14 -51.93 -0.42 1.06 15 4 C -0.04 -0.65 6.33 -26.82 -0.17 -0.82 15 5 C 0.02 0.30 8.07 -81.89 -0.66 -0.36 15 6 N -0.48 -8.56 7.37 33.65 0.25 -8.31 15 7 H 0.42 5.88 8.96 -182.68 -1.64 4.24 15 8 N -0.31 -6.32 12.69 30.67 0.39 -5.93 15 9 C 0.07 1.43 12.03 -17.29 -0.21 1.22 15 10 C -0.19 -4.38 6.20 -104.68 -0.65 -5.03 15 11 C 0.10 2.48 2.89 -91.84 -0.27 2.22 15 12 H 0.07 1.88 7.30 -51.93 -0.38 1.50 15 13 C -0.49 -12.97 6.30 -34.44 -0.22 -13.19 15 14 H 0.05 1.45 7.81 -52.49 -0.41 1.04 15 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 16 N -0.90 -25.25 12.79 55.43 0.71 -24.54 15 17 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 15 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 21 H 0.07 1.46 7.34 -51.93 -0.38 1.08 15 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 15 23 H 0.04 0.90 8.09 -51.93 -0.42 0.48 15 24 H 0.06 0.91 7.91 -51.93 -0.41 0.50 15 25 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 26 H 0.18 3.39 8.06 -52.49 -0.42 2.97 15 27 H 0.26 7.05 8.31 -40.82 -0.34 6.72 15 LS Contribution 230.93 15.07 3.48 3.48 Total: -1.00 -29.11 230.93 -6.94 -36.05 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.46 Total: 1.63 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -2.28 Total: -18.29 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 1.35 Total: -38.78 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.11 -6.94 -36.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990124.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.154 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds