Wall clock time and date at job start Mon Mar 30 2020 02:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.84705 * 2 1 4 4 C 1.54436 * 110.92698 * 236.30055 * 2 1 3 5 5 C 1.51323 * 104.99126 * 267.54464 * 4 2 1 6 6 N 1.35225 * 141.94507 * 163.06784 * 5 4 2 7 7 H 0.96992 * 126.03342 * 0.02562 * 6 5 4 8 8 N 1.40003 * 107.93521 * 179.78611 * 6 5 4 9 9 C 1.30737 * 108.21281 * 0.38200 * 8 6 5 10 10 C 1.35140 * 110.30609 * 343.07721 * 5 4 2 11 11 C 1.51354 * 110.24728 * 359.97438 * 10 5 4 12 12 H 1.08993 * 110.33524 * 257.95091 * 11 10 5 13 13 C 1.50706 * 110.33151 * 135.81644 * 11 10 5 14 14 H 1.07995 * 120.00291 * 325.05388 * 13 11 10 15 15 C 1.37882 * 119.99466 * 145.06143 * 13 11 10 16 16 N 1.31516 * 120.00280 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99693 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46928 * 59.99672 * 17 15 13 19 19 H 1.48496 * 109.47206 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47177 * 299.99738 * 17 15 13 21 21 H 1.09000 * 109.46832 * 302.21657 * 1 2 3 22 22 H 1.08999 * 109.46458 * 62.21588 * 1 2 3 23 23 H 1.08998 * 109.47164 * 182.21215 * 1 2 3 24 24 H 1.08995 * 110.34182 * 26.42635 * 4 2 1 25 25 H 1.09005 * 110.33905 * 148.56748 * 4 2 1 26 26 H 1.08000 * 125.88078 * 179.88971 * 9 8 6 27 27 H 0.97004 * 119.99872 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9179 1.0187 0.0000 4 6 2.0816 -0.8003 -1.2001 5 6 2.2799 -2.2058 -0.6754 6 7 2.4598 -3.4809 -1.0880 7 1 2.5026 -3.7819 -2.0090 8 7 2.5789 -4.2892 0.0489 9 6 2.4661 -3.5275 1.1054 10 6 2.2799 -2.2062 0.6760 11 6 2.0820 -0.8002 1.2002 12 1 3.0325 -0.3823 1.5317 13 6 1.0871 -0.7986 2.3322 14 1 0.2515 -1.4826 2.3177 15 6 1.2436 0.0764 3.3862 16 7 2.2614 0.9092 3.4041 17 14 0.0108 0.0780 4.7897 18 1 -0.0078 -1.2600 5.4337 19 1 0.4014 1.1032 5.7905 20 1 -1.3409 0.3916 4.2608 21 1 -0.3633 0.5479 0.8695 22 1 -0.3632 0.4791 -0.9092 23 1 -0.3633 -1.0269 0.0397 24 1 1.3622 -0.7997 -2.0188 25 1 3.0315 -0.3804 -1.5311 26 1 2.5130 -3.8585 2.1324 27 1 2.3717 1.5245 4.1459 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990124.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:02 Heat of formation + Delta-G solvation = 53.928166 kcal Electronic energy + Delta-G solvation = -11940.676280 eV Core-core repulsion = 9892.173910 eV Total energy + Delta-G solvation = -2048.502370 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.29987 -37.90065 -34.38229 -32.37039 -30.65976 -29.22151 -26.66312 -25.25826 -22.42289 -20.87937 -20.16016 -18.42867 -17.66101 -16.30221 -15.99639 -15.07500 -14.63005 -14.44336 -14.21567 -13.74120 -13.59546 -12.80179 -12.57995 -12.38249 -12.23259 -12.10321 -11.76680 -11.40649 -10.92246 -10.86142 -10.43991 -10.26297 -8.97219 -8.00291 -6.06706 1.04866 1.45875 1.46787 1.53903 1.94976 2.07203 2.51800 3.27263 3.80336 4.07906 4.22653 4.45740 4.62915 4.75555 4.86462 5.02047 5.07467 5.19081 5.52832 5.56957 5.70267 5.73446 5.82368 5.96087 6.00476 6.50356 6.64473 6.87376 7.04625 7.56530 9.06539 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.044493 B = 0.013503 C = 0.011778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.157433 B = 2073.153136 C = 2376.828122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.081 4.081 3 H 0.064 0.936 4 C -0.027 4.027 5 C 0.039 3.961 6 N -0.458 5.458 7 H 0.445 0.555 8 N -0.318 5.318 9 C 0.052 3.948 10 C -0.243 4.243 11 C 0.097 3.903 12 H 0.027 0.973 13 C -0.492 4.492 14 H 0.044 0.956 15 C 0.014 3.986 16 N -0.929 5.929 17 Si 0.942 3.058 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.271 1.271 21 H 0.039 0.961 22 H 0.060 0.940 23 H 0.033 0.967 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.180 0.820 27 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 -2.633 -8.732 9.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.101 4.101 3 H 0.083 0.917 4 C -0.066 4.066 5 C -0.090 4.090 6 N -0.168 5.168 7 H 0.291 0.709 8 N -0.142 5.142 9 C -0.132 4.132 10 C -0.254 4.254 11 C 0.077 3.923 12 H 0.045 0.955 13 C -0.530 4.530 14 H 0.062 0.938 15 C -0.183 4.183 16 N -0.570 5.570 17 Si 0.768 3.232 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.196 1.196 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.052 0.948 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.197 0.803 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.193 -3.700 -9.016 9.818 hybrid contribution -0.481 0.616 1.118 1.364 sum -1.674 -3.085 -7.898 8.643 Atomic orbital electron populations 1.21399 0.94664 1.00076 1.00011 1.21952 0.96319 0.97982 0.93816 0.91741 1.20864 1.02487 0.84869 0.98387 1.22191 1.01428 0.89175 0.96213 1.45517 1.59660 1.03154 1.08492 0.70874 1.77146 1.27300 1.18049 0.91705 1.23463 0.99710 0.91548 0.98475 1.21809 1.11851 0.97113 0.94650 1.17935 0.95782 0.85829 0.92756 0.95463 1.21126 1.09431 1.17713 1.04728 0.93762 1.25616 0.96910 0.95675 1.00124 1.70021 1.30939 1.23243 1.32779 0.85863 0.80077 0.77549 0.79703 1.20136 1.21320 1.19568 0.94175 0.92135 0.94824 0.88532 0.88761 0.80254 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.99 8.15 71.98 0.59 -3.40 15 2 C -0.08 -3.26 3.59 -9.81 -0.04 -3.30 15 3 H 0.06 2.65 8.14 -2.39 -0.02 2.63 15 4 C -0.03 -0.85 6.33 30.53 0.19 -0.66 15 5 C 0.04 1.42 8.07 41.52 0.34 1.76 15 6 N -0.46 -15.01 7.37 -47.46 -0.35 -15.35 15 7 H 0.45 10.57 8.96 -213.39 -1.91 8.66 15 8 N -0.32 -12.26 12.69 -56.87 -0.72 -12.99 15 9 C 0.05 2.21 12.03 85.33 1.03 3.24 15 10 C -0.24 -10.83 6.20 -19.90 -0.12 -10.95 15 11 C 0.10 4.76 2.89 -11.58 -0.03 4.73 15 12 H 0.03 1.54 7.30 -2.39 -0.02 1.53 15 13 C -0.49 -26.38 6.30 25.60 0.16 -26.22 15 14 H 0.04 2.41 7.81 -2.91 -0.02 2.39 15 15 C 0.01 0.78 5.46 84.66 0.46 1.24 15 16 N -0.93 -53.78 12.79 21.45 0.27 -53.51 15 17 Si 0.94 43.53 29.54 68.60 2.03 45.56 15 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 15 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 21 H 0.04 1.72 7.34 -2.39 -0.02 1.70 15 22 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 23 H 0.03 1.32 8.09 -2.39 -0.02 1.30 15 24 H 0.10 2.41 7.91 -2.39 -0.02 2.39 15 25 H 0.09 2.62 8.14 -2.38 -0.02 2.60 15 26 H 0.18 7.09 8.06 -2.91 -0.02 7.06 15 27 H 0.26 14.38 8.31 -92.70 -0.77 13.61 15 Total: -1.00 -62.92 230.93 3.06 -59.86 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -0.74 Total: 10.00 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 2.57 Total: -33.56 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -0.80 Total: -81.85 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -62.92 3.06 -59.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990124.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.783 kcal (2) G-P(sol) polarization free energy of solvation -62.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds