Wall clock time and date at job start Mon Mar 30 2020 01:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00063 * 2 1 4 4 H 1.48491 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47116 * 300.00618 * 3 2 1 6 6 H 1.48502 * 109.46611 * 60.00372 * 3 2 1 7 7 C 1.37874 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99696 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00306 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.74505 * 60.62105 * 9 7 2 11 11 C 1.53398 * 109.71815 * 181.24737 * 9 7 2 12 12 C 1.53412 * 109.31775 * 168.50079 * 11 9 7 13 13 C 1.53264 * 109.34931 * 290.60184 * 12 11 9 14 14 N 1.46471 * 108.90937 * 50.31376 * 13 12 11 15 15 C 1.36320 * 127.77728 * 162.78850 * 14 13 12 16 16 C 1.34849 * 106.68906 * 180.02562 * 15 14 13 17 17 N 1.34291 * 108.07198 * 359.97438 * 16 15 14 18 18 C 1.30092 * 109.21559 * 359.97438 * 17 16 15 19 19 H 0.97007 * 120.00479 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.50425 * 288.42495 * 11 9 7 21 21 H 1.08996 * 109.50734 * 48.51545 * 11 9 7 22 22 H 1.08997 * 109.64615 * 170.57774 * 12 11 9 23 23 H 1.08999 * 109.43087 * 50.50109 * 12 11 9 24 24 H 1.09002 * 109.58622 * 290.45013 * 13 12 11 25 25 H 1.09005 * 109.57942 * 170.17635 * 13 12 11 26 26 H 1.08002 * 126.65122 * 0.11259 * 15 14 13 27 27 H 1.07999 * 125.96495 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6307 -2.5663 -0.8943 11 6 2.2426 -3.6692 0.0303 12 6 1.4831 -4.9706 0.3188 13 6 0.9763 -4.9527 1.7651 14 7 0.2736 -3.6904 2.0063 15 6 -0.5911 -3.3961 3.0182 16 6 -0.9861 -2.1204 2.8313 17 7 -0.3744 -1.6518 1.7315 18 6 0.3821 -2.5847 1.2320 19 1 -0.4851 0.8401 0.0004 20 1 2.7435 -3.7472 -0.9346 21 1 2.9827 -3.4985 0.8119 22 1 2.1486 -5.8222 0.1776 23 1 0.6361 -5.0547 -0.3620 24 1 1.8206 -5.0374 2.4492 25 1 0.2930 -5.7872 1.9230 26 1 -0.8988 -4.0562 3.8157 27 1 -1.6743 -1.5714 3.4569 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261032869.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:49 Heat of formation + Delta-G solvation = 48.651169 kcal Electronic energy + Delta-G solvation = -12163.116429 eV Core-core repulsion = 10114.385231 eV Total energy + Delta-G solvation = -2048.731198 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.66565 -37.27590 -35.28383 -32.89149 -30.41982 -29.13161 -26.83922 -23.90768 -22.75165 -21.73886 -19.55006 -18.50421 -17.26595 -16.58746 -16.18813 -15.23714 -14.88447 -14.65094 -14.38557 -14.16073 -13.30207 -13.20973 -12.88983 -12.74526 -12.30689 -11.93631 -11.63083 -11.41666 -11.06298 -10.49458 -10.01494 -9.79979 -8.76741 -7.86583 -6.04756 1.41891 1.44630 1.53847 1.56734 2.33674 2.50711 2.87309 3.40409 3.83405 4.02025 4.13142 4.29789 4.41534 4.60734 4.74447 4.79192 4.88868 5.03746 5.08806 5.23781 5.45870 5.59949 5.85160 5.89350 6.30427 6.37497 6.75403 7.03130 7.60382 8.02295 9.12366 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.043565 B = 0.015823 C = 0.012503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.556540 B = 1769.137910 C = 2238.956150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.028 3.972 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.293 1.293 7 C -0.563 4.563 8 H 0.055 0.945 9 C 0.118 3.882 10 H 0.011 0.989 11 C -0.108 4.108 12 C -0.126 4.126 13 C 0.101 3.899 14 N -0.478 5.478 15 C -0.074 4.074 16 C -0.100 4.100 17 N -0.470 5.470 18 C 0.222 3.778 19 H 0.250 0.750 20 H 0.074 0.926 21 H 0.052 0.948 22 H 0.120 0.880 23 H 0.060 0.940 24 H 0.089 0.911 25 H 0.109 0.891 26 H 0.203 0.797 27 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.057 -10.914 3.525 11.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.178 4.178 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.219 1.219 7 C -0.601 4.601 8 H 0.073 0.927 9 C 0.098 3.902 10 H 0.028 0.972 11 C -0.146 4.146 12 C -0.163 4.163 13 C -0.020 4.020 14 N -0.162 5.162 15 C -0.208 4.208 16 C -0.249 4.249 17 N -0.186 5.186 18 C -0.041 4.041 19 H 0.060 0.940 20 H 0.093 0.907 21 H 0.071 0.929 22 H 0.138 0.862 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.127 0.873 26 H 0.220 0.780 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.836 -10.161 3.191 10.807 hybrid contribution 0.075 0.623 0.529 0.820 sum 1.911 -9.538 3.720 10.414 Atomic orbital electron populations 1.70296 1.06664 1.25721 1.44501 1.25674 0.95428 1.01874 0.94867 0.85751 0.79314 0.80861 0.77071 1.19068 1.20364 1.21934 1.21076 0.92438 0.90983 1.55613 0.92699 1.17426 0.90812 0.95026 0.86985 0.97154 1.21682 0.97611 0.93494 1.01841 1.21948 1.00977 0.99029 0.94361 1.22145 0.97426 0.83642 0.98772 1.46123 1.35116 1.13156 1.21841 1.22755 1.00793 0.99537 0.97675 1.22994 1.06862 0.95140 0.99908 1.70767 1.09973 1.29457 1.08423 1.24829 0.99728 0.81629 0.97945 0.94037 0.90741 0.92920 0.86226 0.92162 0.89242 0.87257 0.78021 0.82213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -52.28 10.49 21.45 0.23 -52.06 15 2 C 0.03 1.65 5.11 84.65 0.43 2.09 15 3 Si 0.94 46.45 29.54 68.60 2.03 48.48 15 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 15 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 15 6 H -0.29 -14.62 7.11 99.48 0.71 -13.91 15 7 C -0.56 -32.45 8.55 25.60 0.22 -32.23 15 8 H 0.05 3.08 7.75 -2.91 -0.02 3.06 15 9 C 0.12 6.11 2.51 -12.04 -0.03 6.08 15 10 H 0.01 0.61 8.14 -2.39 -0.02 0.59 15 11 C -0.11 -4.14 5.23 30.87 0.16 -3.97 15 12 C -0.13 -3.54 5.97 30.82 0.18 -3.36 15 13 C 0.10 2.84 6.97 86.47 0.60 3.44 15 14 N -0.48 -19.38 3.13 -513.81 -1.61 -20.99 15 15 C -0.07 -2.84 11.64 83.22 0.97 -1.87 15 16 C -0.10 -4.68 11.87 83.54 0.99 -3.69 15 17 N -0.47 -26.78 8.15 -187.52 -1.53 -28.31 15 18 C 0.22 11.57 6.84 138.23 0.95 12.52 15 19 H 0.25 15.09 8.31 -92.70 -0.77 14.32 15 20 H 0.07 2.63 8.14 -2.39 -0.02 2.61 15 21 H 0.05 2.03 8.08 -2.39 -0.02 2.02 15 22 H 0.12 2.30 8.14 -2.39 -0.02 2.28 15 23 H 0.06 1.80 8.12 -2.39 -0.02 1.79 15 24 H 0.09 2.19 8.14 -2.39 -0.02 2.17 15 25 H 0.11 2.30 8.14 -2.38 -0.02 2.28 15 26 H 0.20 5.44 8.06 -2.91 -0.02 5.42 15 27 H 0.16 6.59 8.06 -2.91 -0.02 6.56 15 Total: -1.00 -73.75 226.42 4.73 -69.02 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 1.14 Total: 4.85 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 4.48 Total: -20.99 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -2.91 Total: -101.35 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -73.75 4.73 -69.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032869.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.673 kcal (2) G-P(sol) polarization free energy of solvation -73.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds