Wall clock time and date at job start Mon Mar 30 2020 02:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38614 * 120.44863 * 2 1 4 4 C 1.38585 * 118.39957 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.44650 * 179.72519 * 4 3 2 6 6 C 1.53004 * 109.47194 * 124.99618 * 5 4 3 7 7 C 1.50698 * 109.47194 * 180.02562 * 6 5 4 8 8 H 1.08006 * 119.99794 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99925 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00045 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99756 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47055 * 90.00224 * 11 9 7 13 13 H 1.48509 * 109.46729 * 209.99927 * 11 9 7 14 14 H 1.48497 * 109.47257 * 329.99724 * 11 9 7 15 15 N 1.32349 * 119.10314 * 359.97438 * 4 3 2 16 16 C 1.31773 * 120.81978 * 0.02562 * 15 4 3 17 17 N 1.31813 * 121.75654 * 0.02562 * 16 15 4 18 18 H 1.09008 * 109.47091 * 90.00377 * 1 2 3 19 19 H 1.08997 * 109.47402 * 209.99778 * 1 2 3 20 20 H 1.08998 * 109.47644 * 330.00517 * 1 2 3 21 21 H 1.08006 * 120.80114 * 0.03861 * 3 2 1 22 22 H 1.08993 * 109.47251 * 245.00187 * 5 4 3 23 23 H 1.09001 * 109.47017 * 5.00284 * 5 4 3 24 24 H 1.08998 * 109.47038 * 300.00371 * 6 5 4 25 25 H 1.09008 * 109.46444 * 60.00078 * 6 5 4 26 26 H 0.96997 * 119.99959 * 179.97438 * 10 9 7 27 27 H 1.08006 * 119.12363 * 179.97438 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1950 0.0000 4 6 3.5944 1.1454 -0.0005 5 6 4.4040 2.4164 -0.0068 6 6 5.3764 2.4076 1.1744 7 6 6.1856 3.6789 1.1685 8 1 6.0223 4.4194 0.3994 9 6 7.1344 3.8967 2.1449 10 7 7.3336 2.9947 3.0811 11 14 8.1379 5.4722 2.1372 12 1 7.4371 6.5093 2.9362 13 1 9.4746 5.2106 2.7290 14 1 8.2998 5.9491 0.7402 15 7 4.1963 -0.0332 -0.0005 16 6 3.4956 -1.1492 -0.0005 17 7 2.1775 -1.1407 -0.0010 18 1 -0.3634 -0.0001 -1.0277 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3634 0.8900 0.5137 21 1 1.6899 2.1419 0.0006 22 1 4.9649 2.4853 -0.9388 23 1 3.7357 3.2733 0.0793 24 1 4.8154 2.3387 2.1064 25 1 6.0447 1.5506 1.0883 26 1 8.0013 3.1478 3.7678 27 1 4.0151 -2.0961 -0.0009 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261072074.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:05 Heat of formation + Delta-G solvation = 4.038770 kcal Electronic energy + Delta-G solvation = -11150.874351 eV Core-core repulsion = 9100.208614 eV Total energy + Delta-G solvation = -2050.665737 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.96432 -36.58255 -35.08681 -34.17705 -31.87731 -29.47250 -27.34547 -25.04185 -23.95437 -21.77186 -18.61165 -18.39114 -17.10290 -16.54490 -16.34570 -16.00368 -14.95973 -14.66625 -14.18556 -13.89614 -13.80451 -13.21169 -13.06828 -12.84784 -12.51854 -12.07702 -11.82645 -11.65123 -11.31311 -11.05659 -10.57093 -10.34987 -10.09611 -8.19751 -6.32376 0.00417 0.13702 1.41340 1.43463 1.54598 2.41392 2.82190 3.13736 3.18205 3.24021 3.53089 4.12775 4.16061 4.44115 4.55884 4.66729 4.77053 4.79178 4.95948 5.03080 5.14969 5.46555 5.56812 5.65861 5.83016 6.16208 6.19445 6.84884 7.20910 7.37356 8.92547 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.075868 B = 0.007371 C = 0.007061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.971600 B = 3797.937433 C = 3964.712460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.164 3.836 3 C -0.230 4.230 4 C 0.171 3.829 5 C -0.060 4.060 6 C 0.041 3.959 7 C -0.543 4.543 8 H 0.069 0.931 9 C -0.003 4.003 10 N -0.936 5.936 11 Si 0.970 3.030 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.260 1.260 15 N -0.555 5.555 16 C 0.286 3.714 17 N -0.545 5.545 18 H 0.102 0.898 19 H 0.084 0.916 20 H 0.100 0.900 21 H 0.173 0.827 22 H 0.077 0.923 23 H 0.092 0.908 24 H -0.019 1.019 25 H -0.006 1.006 26 H 0.263 0.737 27 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.465 -3.042 -6.639 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.018 3.982 3 C -0.252 4.252 4 C 0.027 3.973 5 C -0.097 4.097 6 C 0.004 3.996 7 C -0.581 4.581 8 H 0.087 0.913 9 C -0.200 4.200 10 N -0.576 5.576 11 Si 0.794 3.206 12 H -0.195 1.195 13 H -0.210 1.210 14 H -0.184 1.184 15 N -0.271 5.271 16 C -0.001 4.001 17 N -0.261 5.261 18 H 0.120 0.880 19 H 0.103 0.897 20 H 0.118 0.882 21 H 0.190 0.810 22 H 0.095 0.905 23 H 0.111 0.889 24 H 0.000 1.000 25 H 0.013 0.987 26 H 0.072 0.928 27 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -11.899 -3.931 -6.501 14.117 hybrid contribution 0.609 1.149 0.409 1.364 sum -11.289 -2.782 -6.092 13.127 Atomic orbital electron populations 1.20876 0.84669 1.05076 1.04919 1.22444 0.99525 0.87673 0.88549 1.22927 0.94611 1.02127 1.05514 1.22205 0.92803 0.94160 0.88131 1.20654 0.97414 0.91327 1.00334 1.18799 0.93123 0.95988 0.91722 1.21700 1.20023 1.04469 1.11926 0.91252 1.26052 0.98473 1.00528 0.94974 1.70136 1.35051 1.36768 1.15663 0.85371 0.77509 0.78771 0.78920 1.19533 1.21048 1.18386 1.68254 1.43394 0.99772 1.15635 1.25428 0.87200 0.97264 0.90255 1.68324 1.10233 1.31090 1.16486 0.87973 0.89739 0.88158 0.80978 0.90461 0.88915 1.00012 0.98727 0.92819 0.76762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 10.22 71.23 0.73 -0.91 15 2 C 0.16 4.49 6.82 42.57 0.29 4.78 15 3 C -0.23 -6.91 9.49 22.44 0.21 -6.70 15 4 C 0.17 6.58 6.20 42.56 0.26 6.85 15 5 C -0.06 -2.50 5.59 29.85 0.17 -2.33 15 6 C 0.04 2.27 4.84 29.85 0.14 2.41 15 7 C -0.54 -31.12 9.11 25.60 0.23 -30.89 15 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 15 9 C 0.00 -0.16 5.46 84.65 0.46 0.30 15 10 N -0.94 -58.51 13.29 21.45 0.28 -58.23 15 11 Si 0.97 44.40 29.54 68.60 2.03 46.43 15 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 14 H -0.26 -11.23 7.11 99.48 0.71 -10.52 15 15 N -0.55 -22.48 10.05 -188.08 -1.89 -24.37 15 16 C 0.29 9.57 12.28 180.88 2.22 11.80 15 17 N -0.55 -16.93 10.38 -188.07 -1.95 -18.88 15 18 H 0.10 1.33 8.14 -2.38 -0.02 1.31 15 19 H 0.08 1.36 8.14 -2.39 -0.02 1.34 15 20 H 0.10 1.27 8.10 -2.39 -0.02 1.25 15 21 H 0.17 3.96 8.01 -2.91 -0.02 3.94 15 22 H 0.08 3.18 8.14 -2.39 -0.02 3.16 15 23 H 0.09 3.40 7.94 -2.39 -0.02 3.38 15 24 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 15 25 H -0.01 -0.35 7.99 -2.38 -0.02 -0.37 15 26 H 0.26 15.41 8.31 -92.71 -0.77 14.64 15 27 H 0.22 5.63 8.06 -2.91 -0.02 5.61 15 Total: -1.00 -71.07 243.29 4.34 -66.73 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.15 Total: 3.00 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 4.72 Total: -14.69 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -3.56 Total: -101.48 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -71.07 4.34 -66.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072074.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.771 kcal (2) G-P(sol) polarization free energy of solvation -71.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds