Wall clock time and date at job start Mon Mar 30 2020 02:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38621 * 120.44693 * 2 1 4 4 C 1.38580 * 118.39730 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.44567 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47151 * 125.00331 * 5 4 3 7 7 H 1.08002 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99694 * 180.27762 * 6 5 4 9 9 N 1.31514 * 120.00482 * 359.71466 * 8 6 5 10 10 Si 1.86801 * 119.99746 * 179.72062 * 8 6 5 11 11 H 1.48504 * 109.47266 * 60.00049 * 10 8 6 12 12 H 1.48504 * 109.46970 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47383 * 299.99456 * 10 8 6 14 14 N 1.32353 * 119.10475 * 0.27540 * 4 3 2 15 15 C 1.31776 * 120.81860 * 359.44013 * 14 4 3 16 16 C 1.50701 * 119.12110 * 180.31168 * 15 14 4 17 17 N 1.31809 * 121.75536 * 0.57806 * 15 14 4 18 18 H 1.09005 * 109.46657 * 90.00286 * 1 2 3 19 19 H 1.08996 * 109.47004 * 209.99646 * 1 2 3 20 20 H 1.08998 * 109.47006 * 329.99860 * 1 2 3 21 21 H 1.07996 * 120.80010 * 359.95547 * 3 2 1 22 22 H 1.09000 * 109.47088 * 4.99470 * 5 4 3 23 23 H 1.09007 * 109.46560 * 244.99975 * 5 4 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 25 25 H 1.08998 * 109.46989 * 270.25224 * 16 15 14 26 26 H 1.08998 * 109.47317 * 30.25591 * 16 15 14 27 27 H 1.09003 * 109.46841 * 150.26121 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1455 0.0005 5 6 4.4040 2.4166 0.0012 6 6 5.3608 2.4022 1.1653 7 1 5.3804 1.5573 1.8378 8 6 6.2068 3.4703 1.3755 9 7 6.1828 4.4993 0.5569 10 14 7.3874 3.4559 2.8231 11 1 8.3019 2.2919 2.7046 12 1 8.1818 4.7106 2.8265 13 1 6.6175 3.3537 4.0888 14 7 4.1964 -0.0332 -0.0045 15 6 3.4957 -1.1492 0.0010 16 6 4.2206 -2.4704 0.0021 17 7 2.1776 -1.1407 0.0005 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 1.6900 2.1419 -0.0007 22 1 3.7357 3.2730 0.0905 23 1 4.9659 2.4898 -0.9301 24 1 6.7777 5.2509 0.7050 25 1 4.3957 -2.7895 -1.0253 26 1 5.1754 -2.3605 0.5162 27 1 3.6149 -3.2167 0.5161 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261073619.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:08 Heat of formation + Delta-G solvation = 25.632062 kcal Electronic energy + Delta-G solvation = -11338.829510 eV Core-core repulsion = 9289.100129 eV Total energy + Delta-G solvation = -2049.729381 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.41333 -34.41650 -33.70891 -32.31304 -28.87247 -28.61453 -27.18499 -23.70213 -21.69919 -20.57355 -17.09154 -16.14454 -15.19591 -14.76116 -14.62361 -14.24897 -13.15646 -12.75204 -12.60106 -12.48163 -12.07674 -12.00051 -11.72256 -11.41393 -10.82874 -10.70528 -10.21390 -10.01301 -9.67453 -9.30005 -8.63837 -8.43044 -8.36032 -6.07211 -4.08682 1.56047 1.81691 3.33363 3.36620 3.40894 4.33420 4.40469 4.47872 4.75444 5.07388 5.29912 5.46397 5.65663 5.73103 5.82512 5.86201 5.90503 5.94604 6.12579 6.27869 6.58384 7.15570 7.32799 7.41954 7.80835 7.90924 8.23950 8.87888 8.94069 9.53999 11.04104 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045144 B = 0.009873 C = 0.008745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.085886 B = 2835.293375 C = 3201.045103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.162 3.838 3 C -0.246 4.246 4 C 0.221 3.779 5 C 0.058 3.942 6 C -0.503 4.503 7 H 0.059 0.941 8 C 0.058 3.942 9 N -0.897 5.897 10 Si 0.900 3.100 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.277 1.277 14 N -0.510 5.510 15 C 0.306 3.694 16 C -0.078 4.078 17 N -0.547 5.547 18 H 0.077 0.923 19 H 0.075 0.925 20 H 0.076 0.924 21 H 0.139 0.861 22 H 0.040 0.960 23 H 0.047 0.953 24 H 0.263 0.737 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.771 -7.808 -1.081 11.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.016 3.984 3 C -0.268 4.268 4 C 0.076 3.924 5 C 0.021 3.979 6 C -0.542 4.542 7 H 0.077 0.923 8 C -0.143 4.143 9 N -0.536 5.536 10 Si 0.727 3.273 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.203 1.203 14 N -0.225 5.225 15 C 0.038 3.962 16 C -0.137 4.137 17 N -0.264 5.264 18 H 0.096 0.904 19 H 0.094 0.906 20 H 0.095 0.905 21 H 0.157 0.843 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.215 -8.482 -1.121 11.191 hybrid contribution 0.212 0.970 0.752 1.246 sum -7.003 -7.511 -0.369 10.276 Atomic orbital electron populations 1.20677 0.88741 1.03326 1.02910 1.21548 0.96912 0.88590 0.91320 1.22653 0.96465 0.99773 1.07909 1.22748 0.91130 0.95202 0.83280 1.18404 0.94451 0.85914 0.99142 1.20889 1.19239 1.03587 1.10481 0.92263 1.24975 0.97253 0.95339 0.96773 1.69931 1.38864 1.07541 1.37270 0.86524 0.80895 0.77327 0.82515 1.20038 1.21203 1.20263 1.68244 1.41335 0.98174 1.14775 1.23209 0.86614 0.95134 0.91217 1.20450 0.99812 0.90307 1.03122 1.67955 1.09973 1.30398 1.18115 0.90423 0.90617 0.90546 0.84315 0.94150 0.93500 0.92709 0.90359 0.89831 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.22 36.01 0.37 -0.86 15 2 C 0.16 2.85 6.82 -82.24 -0.56 2.29 15 3 C -0.25 -4.78 9.49 -39.31 -0.37 -5.15 15 4 C 0.22 5.11 6.15 -82.24 -0.51 4.61 15 5 C 0.06 1.52 5.41 -29.03 -0.16 1.36 15 6 C -0.50 -14.38 8.93 -34.44 -0.31 -14.69 15 7 H 0.06 1.72 7.70 -52.49 -0.40 1.31 15 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 9 N -0.90 -26.39 13.29 55.43 0.74 -25.66 15 10 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 15 11 H -0.27 -6.63 7.11 56.52 0.40 -6.22 15 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 14 N -0.51 -11.71 10.02 -6.99 -0.07 -11.78 15 15 C 0.31 6.05 7.64 -157.20 -1.20 4.85 15 16 C -0.08 -1.17 10.32 36.01 0.37 -0.80 15 17 N -0.55 -10.34 10.27 -6.98 -0.07 -10.41 15 18 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 19 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 20 H 0.08 0.82 8.10 -51.93 -0.42 0.40 15 21 H 0.14 2.36 8.01 -52.49 -0.42 1.94 15 22 H 0.04 1.05 7.94 -51.93 -0.41 0.64 15 23 H 0.05 1.30 8.14 -51.93 -0.42 0.87 15 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.08 1.23 8.14 -51.93 -0.42 0.80 15 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 LS Contribution 243.79 15.07 3.67 3.67 Total: -1.00 -31.51 243.79 -6.54 -38.05 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: -3.33 Total: -3.84 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -2.46 Total: -6.85 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.59 Total: -47.85 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.51 -6.54 -38.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261073619.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.684 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds