Wall clock time and date at job start Mon Mar 30 2020 02:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38621 * 120.44693 * 2 1 4 4 C 1.38580 * 118.39730 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.44567 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47151 * 125.00331 * 5 4 3 7 7 H 1.08002 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99694 * 180.27762 * 6 5 4 9 9 N 1.31514 * 120.00482 * 359.71466 * 8 6 5 10 10 Si 1.86801 * 119.99746 * 179.72062 * 8 6 5 11 11 H 1.48504 * 109.47266 * 60.00049 * 10 8 6 12 12 H 1.48504 * 109.46970 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47383 * 299.99456 * 10 8 6 14 14 N 1.32353 * 119.10475 * 0.27540 * 4 3 2 15 15 C 1.31776 * 120.81860 * 359.44013 * 14 4 3 16 16 C 1.50701 * 119.12110 * 180.31168 * 15 14 4 17 17 N 1.31809 * 121.75536 * 0.57806 * 15 14 4 18 18 H 1.09005 * 109.46657 * 90.00286 * 1 2 3 19 19 H 1.08996 * 109.47004 * 209.99646 * 1 2 3 20 20 H 1.08998 * 109.47006 * 329.99860 * 1 2 3 21 21 H 1.07996 * 120.80010 * 359.95547 * 3 2 1 22 22 H 1.09000 * 109.47088 * 4.99470 * 5 4 3 23 23 H 1.09007 * 109.46560 * 244.99975 * 5 4 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 25 25 H 1.08998 * 109.46989 * 270.25224 * 16 15 14 26 26 H 1.08998 * 109.47317 * 30.25591 * 16 15 14 27 27 H 1.09003 * 109.46841 * 150.26121 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1455 0.0005 5 6 4.4040 2.4166 0.0012 6 6 5.3608 2.4022 1.1653 7 1 5.3804 1.5573 1.8378 8 6 6.2068 3.4703 1.3755 9 7 6.1828 4.4993 0.5569 10 14 7.3874 3.4559 2.8231 11 1 8.3019 2.2919 2.7046 12 1 8.1818 4.7106 2.8265 13 1 6.6175 3.3537 4.0888 14 7 4.1964 -0.0332 -0.0045 15 6 3.4957 -1.1492 0.0010 16 6 4.2206 -2.4704 0.0021 17 7 2.1776 -1.1407 0.0005 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 1.6900 2.1419 -0.0007 22 1 3.7357 3.2730 0.0905 23 1 4.9659 2.4898 -0.9301 24 1 6.7777 5.2509 0.7050 25 1 4.3957 -2.7895 -1.0253 26 1 5.1754 -2.3605 0.5162 27 1 3.6149 -3.2167 0.5161 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261073619.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:08 Heat of formation + Delta-G solvation = 5.495814 kcal Electronic energy + Delta-G solvation = -11339.702683 eV Core-core repulsion = 9289.100129 eV Total energy + Delta-G solvation = -2050.602555 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.94177 -36.19221 -35.18675 -34.24191 -30.52893 -29.99903 -28.70744 -25.69133 -23.11209 -22.26005 -18.86835 -18.11042 -16.89128 -16.35375 -16.21500 -15.80650 -14.45637 -14.25400 -14.17664 -14.12628 -13.54016 -13.31224 -13.06840 -12.99639 -12.68460 -12.61458 -11.99924 -11.76369 -11.62773 -11.05701 -10.63479 -10.12322 -10.00261 -8.25297 -6.35119 0.05957 0.23571 1.38612 1.41740 1.50048 2.38447 2.85045 3.07467 3.10458 3.28070 3.66422 4.15610 4.32202 4.48843 4.61785 4.71160 4.72739 4.78164 4.93738 5.07998 5.16605 5.22185 5.35753 5.66655 5.66838 6.06821 6.29847 6.71939 7.30125 7.33979 8.86095 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045144 B = 0.009873 C = 0.008745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.085886 B = 2835.293375 C = 3201.045103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.168 3.832 3 C -0.250 4.250 4 C 0.190 3.810 5 C 0.067 3.933 6 C -0.523 4.523 7 H 0.048 0.952 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.967 3.033 11 H -0.272 1.272 12 H -0.276 1.276 13 H -0.269 1.269 14 N -0.547 5.547 15 C 0.295 3.705 16 C -0.075 4.075 17 N -0.547 5.547 18 H 0.100 0.900 19 H 0.088 0.912 20 H 0.097 0.903 21 H 0.159 0.841 22 H 0.032 0.968 23 H 0.017 0.983 24 H 0.268 0.732 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.893 -8.884 -0.366 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.022 3.978 3 C -0.272 4.272 4 C 0.046 3.954 5 C 0.029 3.971 6 C -0.562 4.562 7 H 0.066 0.934 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.791 3.209 11 H -0.197 1.197 12 H -0.201 1.201 13 H -0.194 1.194 14 N -0.264 5.264 15 C 0.027 3.973 16 C -0.133 4.133 17 N -0.264 5.264 18 H 0.118 0.882 19 H 0.106 0.894 20 H 0.116 0.884 21 H 0.177 0.823 22 H 0.050 0.950 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.342 -9.562 -0.410 12.697 hybrid contribution 0.481 1.254 0.483 1.427 sum -7.861 -8.309 0.073 11.438 Atomic orbital electron populations 1.20842 0.84511 1.05008 1.04802 1.22395 0.99426 0.87384 0.88602 1.22827 0.94967 1.01735 1.07681 1.22384 0.92587 0.94358 0.86069 1.18107 0.94099 0.87780 0.97085 1.21121 1.20338 1.03459 1.11256 0.93384 1.25837 0.98824 0.94795 0.99539 1.70034 1.39685 1.08113 1.38838 0.85480 0.78636 0.77681 0.79122 1.19691 1.20062 1.19365 1.68151 1.42821 0.98977 1.16420 1.24036 0.87367 0.95684 0.90169 1.20594 0.99617 0.88465 1.04651 1.68145 1.09516 1.30771 1.17974 0.88155 0.89367 0.88446 0.82328 0.94983 0.96525 0.92337 0.88440 0.90012 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.98 10.22 71.24 0.73 -1.26 15 2 C 0.17 5.55 6.82 42.58 0.29 5.85 15 3 C -0.25 -9.57 9.49 22.44 0.21 -9.36 15 4 C 0.19 8.98 6.15 42.56 0.26 9.24 15 5 C 0.07 3.63 5.41 29.10 0.16 3.79 15 6 C -0.52 -30.76 8.93 25.60 0.23 -30.53 15 7 H 0.05 2.86 7.70 -2.91 -0.02 2.84 15 8 C 0.01 0.50 5.46 84.65 0.46 0.96 15 9 N -0.93 -55.52 13.29 21.45 0.28 -55.23 15 10 Si 0.97 45.02 29.54 68.60 2.03 47.04 15 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 15 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 13 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 14 N -0.55 -25.53 10.02 -176.02 -1.76 -27.29 15 15 C 0.29 11.39 7.64 138.75 1.06 12.45 15 16 C -0.08 -2.11 10.32 71.24 0.74 -1.38 15 17 N -0.55 -19.61 10.27 -176.01 -1.81 -21.42 15 18 H 0.10 1.74 8.14 -2.38 -0.02 1.72 15 19 H 0.09 1.69 8.14 -2.39 -0.02 1.67 15 20 H 0.10 1.68 8.10 -2.39 -0.02 1.66 15 21 H 0.16 5.23 8.01 -2.91 -0.02 5.21 15 22 H 0.03 1.74 7.94 -2.39 -0.02 1.72 15 23 H 0.02 0.98 8.14 -2.38 -0.02 0.96 15 24 H 0.27 15.01 8.31 -92.71 -0.77 14.24 15 25 H 0.10 2.36 8.14 -2.39 -0.02 2.34 15 26 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 27 H 0.10 2.34 8.14 -2.39 -0.02 2.32 15 Total: -1.00 -68.84 243.79 4.03 -64.81 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: 1.15 Total: 2.32 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 4.14 Total: -10.24 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -3.29 Total: -103.94 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -68.84 4.03 -64.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261073619.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.310 kcal (2) G-P(sol) polarization free energy of solvation -68.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds