Wall clock time and date at job start Mon Mar 30 2020 01:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99968 * 2 1 4 4 H 1.48498 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47215 * 300.00484 * 3 2 1 6 6 H 1.48500 * 109.46883 * 60.00564 * 3 2 1 7 7 C 1.37878 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00452 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99741 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.46791 * 300.00963 * 9 7 2 11 11 C 1.53294 * 109.44467 * 180.02562 * 9 7 2 12 12 C 1.53403 * 109.17238 * 170.50921 * 11 9 7 13 13 C 1.51039 * 108.24410 * 48.82078 * 12 11 9 14 14 N 1.30091 * 127.38995 * 164.00180 * 13 12 11 15 15 C 1.34287 * 109.21446 * 180.02562 * 14 13 12 16 16 C 1.34852 * 108.07256 * 359.97438 * 15 14 13 17 17 N 1.35423 * 123.98481 * 344.02828 * 13 12 11 18 18 C 1.46471 * 124.82471 * 359.86337 * 17 13 12 19 19 H 0.96996 * 119.99827 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.55848 * 50.59674 * 11 9 7 21 21 H 1.08994 * 109.53282 * 290.41181 * 11 9 7 22 22 H 1.09002 * 109.71753 * 289.11951 * 12 11 9 23 23 H 1.09001 * 109.71512 * 168.51927 * 12 11 9 24 24 H 1.08003 * 125.96604 * 179.97438 * 15 14 13 25 25 H 1.08007 * 126.65684 * 179.97438 * 16 15 14 26 26 H 1.08998 * 109.58221 * 102.65645 * 18 17 13 27 27 H 1.08997 * 109.58729 * 223.07361 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6246 -2.5569 0.8897 11 6 2.2477 -3.6638 -0.0005 12 6 1.4895 -4.9758 0.2384 13 6 0.3080 -5.0170 -0.7017 14 7 -0.4099 -6.0532 -1.0232 15 6 -1.3670 -5.6770 -1.8867 16 6 -1.2348 -4.3532 -2.1071 17 7 -0.1751 -3.9355 -1.3581 18 6 0.3697 -2.5801 -1.2517 19 1 -0.4850 0.8400 0.0004 20 1 2.9804 -3.5172 0.7931 21 1 2.7569 -3.7078 -0.9632 22 1 1.1400 -5.0159 1.2701 23 1 2.1471 -5.8220 0.0398 24 1 -2.1126 -6.3220 -2.3278 25 1 -1.8487 -3.7424 -2.7526 26 1 0.9679 -2.3565 -2.1350 27 1 -0.4472 -1.8632 -1.1702 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261083990.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:41 Heat of formation + Delta-G solvation = 42.412527 kcal Electronic energy + Delta-G solvation = -11897.415713 eV Core-core repulsion = 9848.413987 eV Total energy + Delta-G solvation = -2049.001726 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.47279 -36.05926 -32.64022 -32.33223 -29.04872 -27.58071 -24.99771 -23.02132 -20.82213 -20.55984 -18.04587 -16.55356 -16.05214 -14.87506 -14.65181 -13.71701 -13.48052 -13.19486 -12.82295 -12.69435 -12.16662 -11.50967 -11.18758 -10.93203 -10.70456 -10.62278 -10.03751 -9.57835 -9.27346 -9.22319 -8.85147 -8.51410 -7.65278 -6.28087 -4.35177 2.83237 3.16109 3.25466 3.28958 3.77254 3.77752 4.24404 5.03776 5.05565 5.55240 5.76253 5.80528 5.84222 6.16012 6.25153 6.37792 6.38968 6.59080 6.60702 6.72732 7.24620 7.26908 7.48549 7.51328 7.72116 7.91895 8.16682 8.70361 8.80968 9.32557 10.79531 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.064703 B = 0.011119 C = 0.009862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.646012 B = 2517.719674 C = 2838.521793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.038 3.962 10 H 0.038 0.962 11 C -0.116 4.116 12 C -0.033 4.033 13 C 0.204 3.796 14 N -0.510 5.510 15 C -0.052 4.052 16 C -0.062 4.062 17 N -0.438 5.438 18 C 0.102 3.898 19 H 0.265 0.735 20 H 0.069 0.931 21 H 0.054 0.946 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.159 0.841 25 H 0.165 0.835 26 H 0.064 0.936 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.571 -3.913 -2.147 4.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.019 3.981 10 H 0.056 0.944 11 C -0.154 4.154 12 C -0.072 4.072 13 C -0.059 4.059 14 N -0.230 5.230 15 C -0.201 4.201 16 C -0.198 4.198 17 N -0.117 5.117 18 C -0.019 4.019 19 H 0.075 0.925 20 H 0.088 0.912 21 H 0.073 0.927 22 H 0.098 0.902 23 H 0.097 0.903 24 H 0.177 0.823 25 H 0.182 0.818 26 H 0.082 0.918 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.601 -4.385 -1.854 4.798 hybrid contribution -0.010 1.849 -0.512 1.919 sum 0.591 -2.535 -2.366 3.517 Atomic orbital electron populations 1.69839 1.06074 1.27176 1.49959 1.25072 0.94967 0.99690 0.94344 0.86400 0.80130 0.82991 0.77770 1.19530 1.20869 1.20789 1.21119 0.93300 0.89540 1.51520 0.91625 1.19018 0.92743 0.93357 0.92944 0.94382 1.21813 0.98771 0.93410 1.01447 1.20229 0.91229 0.99624 0.96133 1.23268 0.99901 0.82476 1.00229 1.69947 1.07656 1.29033 1.16351 1.22160 1.01697 0.93261 1.03030 1.22531 0.96081 0.97155 1.04037 1.46022 1.22704 1.11165 1.31823 1.22735 1.00444 0.77465 1.01216 0.92494 0.91210 0.92749 0.90210 0.90290 0.82315 0.81799 0.91778 0.86964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.81 11.45 55.43 0.63 -23.17 15 2 C 0.06 1.58 5.30 -17.82 -0.09 1.49 15 3 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 15 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 15 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.52 -13.06 8.53 -34.44 -0.29 -13.36 15 8 H 0.07 1.63 7.74 -52.49 -0.41 1.22 15 9 C 0.04 0.90 2.12 -91.49 -0.19 0.70 15 10 H 0.04 0.99 8.12 -51.92 -0.42 0.56 15 11 C -0.12 -2.29 5.21 -26.37 -0.14 -2.43 15 12 C -0.03 -0.61 6.33 -27.51 -0.17 -0.79 15 13 C 0.20 4.33 7.65 -155.24 -1.19 3.15 15 14 N -0.51 -10.87 11.24 -10.62 -0.12 -10.99 15 15 C -0.05 -0.99 11.87 -17.68 -0.21 -1.20 15 16 C -0.06 -1.18 11.64 -16.76 -0.20 -1.38 15 17 N -0.44 -9.39 3.13 -113.76 -0.36 -9.75 15 18 C 0.10 2.31 5.89 -3.92 -0.02 2.29 15 19 H 0.27 6.75 8.31 -40.82 -0.34 6.41 15 20 H 0.07 1.28 8.12 -51.93 -0.42 0.86 15 21 H 0.05 1.06 8.12 -51.93 -0.42 0.64 15 22 H 0.08 1.41 8.14 -51.93 -0.42 0.98 15 23 H 0.08 1.29 8.14 -51.93 -0.42 0.86 15 24 H 0.16 2.45 8.06 -52.48 -0.42 2.02 15 25 H 0.16 2.63 8.06 -52.48 -0.42 2.20 15 26 H 0.06 1.45 8.12 -51.93 -0.42 1.03 15 27 H 0.11 2.78 6.41 -51.93 -0.33 2.44 15 LS Contribution 228.57 15.07 3.44 3.44 Total: -1.00 -27.90 228.57 -7.18 -35.07 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -3.25 Total: 2.02 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -2.51 Total: -11.53 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.16 Total: -43.91 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -27.90 -7.18 -35.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083990.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.486 kcal (2) G-P(sol) polarization free energy of solvation -27.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds