Wall clock time and date at job start Mon Mar 30 2020 02:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46902 * 2 1 4 4 C 1.50697 * 109.46938 * 240.00603 * 2 1 3 5 5 H 1.08001 * 119.99981 * 240.07748 * 4 2 1 6 6 C 1.37885 * 120.00295 * 60.08116 * 4 2 1 7 7 N 1.31515 * 119.99681 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99971 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47371 * 89.99791 * 8 6 4 10 10 H 1.48506 * 109.47075 * 209.99834 * 8 6 4 11 11 H 1.48497 * 109.47453 * 329.99283 * 8 6 4 12 12 C 1.50690 * 109.47425 * 120.00454 * 2 1 3 13 13 C 1.38602 * 120.80262 * 178.17502 * 12 2 1 14 14 N 1.32339 * 119.10463 * 179.72525 * 13 12 2 15 15 C 1.31787 * 120.81738 * 0.27170 * 14 13 12 16 16 N 1.31795 * 121.75937 * 0.02562 * 15 14 13 17 17 C 1.32335 * 120.81566 * 359.97438 * 16 15 14 18 18 H 1.08996 * 109.46904 * 299.99152 * 1 2 3 19 19 H 1.08995 * 109.47449 * 59.99856 * 1 2 3 20 20 H 1.09005 * 109.46716 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46929 * 179.97438 * 3 2 1 22 22 H 1.08995 * 109.47186 * 300.00305 * 3 2 1 23 23 H 1.09003 * 109.46855 * 60.00330 * 3 2 1 24 24 H 0.97003 * 119.99544 * 180.02562 * 7 6 4 25 25 H 1.07999 * 120.44638 * 359.97438 * 13 12 2 26 26 H 1.08002 * 119.12361 * 180.02562 * 15 14 13 27 27 H 1.08003 * 120.44713 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6522 -1.5891 -1.1315 6 6 1.7006 -0.2381 -2.4828 7 7 0.9454 0.8318 -2.6034 8 14 2.3226 -1.1190 -4.0081 9 1 1.3431 -2.1590 -4.4132 10 1 2.4897 -0.1396 -5.1118 11 1 3.6297 -1.7586 -3.7119 12 6 2.0324 -0.7104 1.2303 13 6 3.3908 -0.8795 1.4473 14 7 3.7951 -1.5038 2.5419 15 6 2.9240 -1.9662 3.4161 16 7 1.6251 -1.8290 3.2402 17 6 1.1470 -1.2158 2.1693 18 1 -0.3633 0.5137 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 3.1300 1.4426 0.0005 22 1 1.6766 1.9564 -0.8899 23 1 1.6767 1.9563 0.8901 24 1 0.7117 1.1637 -3.4844 25 1 4.1099 -0.5033 0.7347 26 1 3.2841 -2.4710 4.3004 27 1 0.0814 -1.1071 2.0309 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261106438.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:55 Heat of formation + Delta-G solvation = 37.041954 kcal Electronic energy + Delta-G solvation = -11891.384616 eV Core-core repulsion = 9842.150005 eV Total energy + Delta-G solvation = -2049.234611 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.35828 -35.99755 -33.03076 -31.99725 -29.24947 -26.30951 -25.34104 -23.59401 -23.24431 -19.35990 -17.06982 -16.70064 -16.03149 -15.01177 -14.06490 -13.63649 -13.08529 -12.85029 -12.75322 -11.76054 -11.60273 -11.12962 -11.10521 -10.78663 -10.60373 -10.32282 -10.11556 -9.88447 -9.40145 -9.24449 -8.61829 -8.40699 -8.34105 -6.11492 -4.23103 1.69812 1.73743 3.22746 3.30346 3.33826 4.30135 4.50261 4.73742 4.89043 5.15721 5.44704 5.77703 5.82810 6.16273 6.53494 6.59016 6.78263 6.78766 6.88113 7.13450 7.18337 7.42736 7.55183 7.66980 7.87995 8.02104 8.25457 8.69994 8.76311 9.43401 10.89478 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049398 B = 0.012425 C = 0.011330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.687623 B = 2252.966651 C = 2470.692992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.102 3.898 3 C -0.127 4.127 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C -0.123 4.123 13 C 0.142 3.858 14 N -0.527 5.527 15 C 0.249 3.751 16 N -0.527 5.527 17 C 0.121 3.879 18 H 0.014 0.986 19 H 0.091 0.909 20 H 0.030 0.970 21 H 0.029 0.971 22 H 0.091 0.909 23 H 0.010 0.990 24 H 0.262 0.738 25 H 0.165 0.835 26 H 0.182 0.818 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 -1.113 4.780 4.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.101 3.899 3 C -0.185 4.185 4 C -0.545 4.545 5 H 0.074 0.926 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.127 4.127 13 C -0.023 4.023 14 N -0.241 5.241 15 C -0.039 4.039 16 N -0.241 5.241 17 C -0.044 4.044 18 H 0.033 0.967 19 H 0.109 0.891 20 H 0.050 0.950 21 H 0.048 0.952 22 H 0.110 0.890 23 H 0.029 0.971 24 H 0.072 0.928 25 H 0.182 0.818 26 H 0.199 0.801 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.202 -1.465 5.459 5.778 hybrid contribution 0.008 -0.112 -1.603 1.606 sum 1.209 -1.576 3.857 4.338 Atomic orbital electron populations 1.21918 0.97208 0.99391 1.00927 1.17200 0.92917 0.92010 0.87796 1.21827 0.98597 0.97322 1.00768 1.20996 1.32035 1.12042 0.89453 0.92562 1.24888 0.94733 0.94842 0.98846 1.69796 1.36321 1.22480 1.23518 0.86553 0.79354 0.79430 0.82492 1.20642 1.21088 1.19864 1.22429 0.95038 0.96793 0.98415 1.23118 0.95031 0.91639 0.92556 1.68320 1.40715 1.11090 1.03979 1.24578 0.85330 0.96198 0.97807 1.68298 1.16933 1.16060 1.22786 1.23280 1.01175 0.91557 0.88393 0.96715 0.89082 0.95044 0.95179 0.89015 0.97105 0.92756 0.81784 0.80091 0.81896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 6.93 37.16 0.26 -2.76 15 2 C 0.10 2.33 0.59 -156.81 -0.09 2.23 15 3 C -0.13 -2.85 8.09 37.16 0.30 -2.54 15 4 C -0.51 -12.77 7.70 -34.44 -0.27 -13.04 15 5 H 0.06 1.45 7.57 -52.49 -0.40 1.05 15 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 15 7 N -0.88 -22.81 9.35 55.43 0.52 -22.29 15 8 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 15 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 10 H -0.29 -6.41 7.11 56.52 0.40 -6.00 15 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 12 C -0.12 -2.57 4.72 -104.36 -0.49 -3.07 15 13 C 0.14 2.86 10.01 -17.20 -0.17 2.69 15 14 N -0.53 -10.12 10.44 -14.58 -0.15 -10.27 15 15 C 0.25 4.40 12.28 -92.16 -1.13 3.27 15 16 N -0.53 -9.95 10.44 -14.58 -0.15 -10.10 15 17 C 0.12 2.36 10.24 -17.20 -0.18 2.18 15 18 H 0.01 0.28 7.49 -51.93 -0.39 -0.11 15 19 H 0.09 2.21 6.08 -51.93 -0.32 1.89 15 20 H 0.03 0.67 7.63 -51.93 -0.40 0.27 15 21 H 0.03 0.64 7.59 -51.93 -0.39 0.24 15 22 H 0.09 2.23 6.06 -51.93 -0.31 1.92 15 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 24 H 0.26 6.54 8.31 -40.82 -0.34 6.20 15 25 H 0.17 3.19 7.77 -52.49 -0.41 2.78 15 26 H 0.18 2.47 8.06 -52.49 -0.42 2.05 15 27 H 0.16 2.94 6.07 -52.48 -0.32 2.62 15 LS Contribution 227.58 15.07 3.43 3.43 Total: -1.00 -26.36 227.58 -6.16 -32.52 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -2.91 Total: 0.96 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -1.86 Total: -9.38 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.21 Total: -42.66 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -26.36 -6.16 -32.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261106438.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.557 kcal (2) G-P(sol) polarization free energy of solvation -26.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds